STRINGSTRING
Dgeo_0660 Dgeo_0660 Dgeo_0537 Dgeo_0537 Dgeo_0475 Dgeo_0475 Dgeo_1746 Dgeo_1746 Dgeo_0672 Dgeo_0672 Dgeo_0611 Dgeo_0611
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Dgeo_0660PFAM: alpha amylase, catalytic region: (4.8e-71); SMART: Alpha amylase, catalytic subdomain: (3.1e-89); KEGG: dra:DR1472 glycosyl hydrolase, family 13, ev=0.0, 71% identity. (484 aa)
Dgeo_0537KEGG: dra:DR2036 trehalose synthase, putative, ev=0.0, 84% identity; TIGRFAM: Trehalose synthase-like: (0); PFAM: alpha amylase, catalytic region: (1.5e-59); SMART: Alpha amylase, catalytic subdomain: (4e-106). (556 aa)
Dgeo_0475PFAM: alpha amylase, catalytic region: (5.5e-72); SMART: Alpha amylase, catalytic subdomain: (2e-92); KEGG: dra:DR0723 glycosyl hydrolase, family 13, ev=0.0, 63% identity. (608 aa)
Dgeo_1746PFAM: Fibronectin, type III: (0.0017) alpha amylase, catalytic region: (1.8e-72); SMART: Alpha amylase, catalytic subdomain: (2.7e-82); KEGG: gka:GK0707 alpha-amylase, ev=2e-68, 38% identity; Belongs to the glycosyl hydrolase 13 family. (1021 aa)
Dgeo_0672PFAM: alpha amylase, catalytic region: (4.5e-114); SMART: Alpha amylase, catalytic subdomain: (4.1e-148); KEGG: dra:DR1375 alpha-glucosidase, ev=0.0, 77% identity. (533 aa)
Dgeo_0611Isoamylase / pullulanase; PFAM: alpha amylase, catalytic region: (3.5e-93); SMART: Alpha amylase, catalytic subdomain: (1.1e-106); KEGG: dra:DR1141 glycosyl hydrolase, family 13, ev=0.0, 72% identity. (496 aa)
Your Current Organism:
Deinococcus geothermalis
NCBI taxonomy Id: 319795
Other names: D. geothermalis DSM 11300, Deinococcus geothermalis AG-3a, Deinococcus geothermalis CIP 105573, Deinococcus geothermalis DSM 11300, Deinococcus geothermalis str. DSM 11300, Deinococcus geothermalis strain DSM 11300
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