STRINGSTRING
Dgeo_0192 Dgeo_0192 Dgeo_0242 Dgeo_0242 Dgeo_0340 Dgeo_0340 Dgeo_0795 Dgeo_0795 Dgeo_1875 Dgeo_1875 Dgeo_2008 Dgeo_2008
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Dgeo_0192PFAM: Nucleotidyl transferase: (7.5e-43); KEGG: ttj:TTHA0224 glucose-1-phosphate thymidylyltransferase, ev=3e-65, 43% identity. (365 aa)
Dgeo_0242ROK domain protein; PFAM: ROK: (1.7e-54); KEGG: dra:DR2296 glucokinase, ev=1e-128, 76% identity. (320 aa)
Dgeo_0340TIGRFAM: glucose-1-phosphate thymidyltransferase: (3.9e-210); PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase: (0.0011) Nucleotidyl transferase: (4.1e-65); KEGG: dra:DRA0031 glucose-1-phosphate thymidylyltransferase, putative, ev=1e-155, 75% identity. (355 aa)
Dgeo_0795PFAM: inositol monophosphatase: (1.3e-74); KEGG: dra:DR1703 inositol monophosphatase family protein, ev=1e-123, 69% identity. (402 aa)
Dgeo_1875TIGRFAM: phosphoglucomutase, alpha-D-glucose phosphate-specific: (0); PFAM: phosphoglucomutase/phosphomannomutase C terminal: (2.9e-12) phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I: (1.1e-35) phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II: (2.5e-17) phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III: (1.9e-32); KEGG: pca:Pcar_1989 phosphoglucomutase, alpha-D-glucose phosphate-specific, ev=0.0, 61% identity. (547 aa)
Dgeo_2008dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. (723 aa)
Your Current Organism:
Deinococcus geothermalis
NCBI taxonomy Id: 319795
Other names: D. geothermalis DSM 11300, Deinococcus geothermalis AG-3a, Deinococcus geothermalis CIP 105573, Deinococcus geothermalis DSM 11300, Deinococcus geothermalis str. DSM 11300, Deinococcus geothermalis strain DSM 11300
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