(7 nodes) Mixed, incl. ABC-2 transporter-like, and Mce/MlaD network (Neoasaia chiangmaiensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AQS89470.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)
	AQS88412.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)
	AQS89469.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (332 aa)
	AQS88413.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (264 aa)
	AQS88414.1	Paraquat-inducible protein A; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (490 aa)
	pqiB	Paraquat-inducible protein B; Derived by automated computational analysis using gene prediction method: Protein Homology. (564 aa)
	AQS88416.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (206 aa)

Your Current Organism:

Neoasaia chiangmaiensis

NCBI taxonomy Id: 320497
Other names: BCC 15763, N. chiangmaiensis, NBRC 101099, Neoasaia chiangmaiensis Yukphan et al. 2006, strain AC28

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AQS88412.1	AQS88413.1	A0U93_11195	A0U93_11205	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.524
AQS88412.1	AQS89469.1	A0U93_11195	A0U93_11200	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.964
AQS88412.1	AQS89470.1	A0U93_11195	A0U93_11190	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
AQS88413.1	AQS88412.1	A0U93_11205	A0U93_11195	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.524
AQS88413.1	AQS88414.1	A0U93_11205	A0U93_11215	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Paraquat-inducible protein A; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.449
AQS88413.1	AQS88416.1	A0U93_11205	A0U93_11225	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.445
AQS88413.1	AQS89469.1	A0U93_11205	A0U93_11200	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.524
AQS88413.1	AQS89470.1	A0U93_11205	A0U93_11190	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.485
AQS88413.1	pqiB	A0U93_11205	A0U93_11220	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Paraquat-inducible protein B; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.445
AQS88414.1	AQS88413.1	A0U93_11215	A0U93_11205	Paraquat-inducible protein A; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.449
AQS88414.1	AQS88416.1	A0U93_11215	A0U93_11225	Paraquat-inducible protein A; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.856
AQS88414.1	pqiB	A0U93_11215	A0U93_11220	Paraquat-inducible protein A; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Paraquat-inducible protein B; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
AQS88416.1	AQS88413.1	A0U93_11225	A0U93_11205	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.445
AQS88416.1	AQS88414.1	A0U93_11225	A0U93_11215	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Paraquat-inducible protein A; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.856
AQS88416.1	pqiB	A0U93_11225	A0U93_11220	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Paraquat-inducible protein B; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.844
AQS89469.1	AQS88412.1	A0U93_11200	A0U93_11195	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.964
AQS89469.1	AQS88413.1	A0U93_11200	A0U93_11205	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.524
AQS89469.1	AQS89470.1	A0U93_11200	A0U93_11190	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
AQS89470.1	AQS88412.1	A0U93_11190	A0U93_11195	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
AQS89470.1	AQS88413.1	A0U93_11190	A0U93_11205	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.485