STRINGSTRING
truA-2 truA-2 AKP54133.1 AKP54133.1 gyrB gyrB AKP54070.1 AKP54070.1 queA-2 queA-2 AKP54042.1 AKP54042.1 AKP54022.1 AKP54022.1 truB truB AKP53945.1 AKP53945.1 AKP53788.1 AKP53788.1 AKP53751.1 AKP53751.1 AKP53731.1 AKP53731.1 AKP53719.1 AKP53719.1 AKP53677.1 AKP53677.1 AKP53563.1 AKP53563.1 AKP53560.1 AKP53560.1 gyrA gyrA AKP53492.1 AKP53492.1 AKP53349.1 AKP53349.1 AKP53275.1 AKP53275.1 AKP53083.1 AKP53083.1 AKP53082.1 AKP53082.1 AKP53066.1 AKP53066.1 AKP53050.1 AKP53050.1 topA topA AKP52808.1 AKP52808.1 AKP52741.1 AKP52741.1 araA araA AKP52592.1 AKP52592.1 AKP52498.1 AKP52498.1 AKP52463.1 AKP52463.1 AKP52462.1 AKP52462.1 trpF trpF groL groL AKP52320.1 AKP52320.1 AKP52295.1 AKP52295.1 AKP52255.1 AKP52255.1 AKP52192.1 AKP52192.1 murI murI hisA hisA AKP52089.1 AKP52089.1 AKP52042.1 AKP52042.1 uxaC uxaC AKP51972.1 AKP51972.1 AKP51806.1 AKP51806.1 AKP51707.1 AKP51707.1 AKP51665.1 AKP51665.1 AKP51664.1 AKP51664.1 AKP51625.1 AKP51625.1 AKP51624.1 AKP51624.1 AKP51481.1 AKP51481.1 AKP51453.1 AKP51453.1 dapF dapF purE purE AKP51042.1 AKP51042.1 AKP51030.1 AKP51030.1 AKP51018.1 AKP51018.1 AKP51017.1 AKP51017.1 AKP51016.1 AKP51016.1 AKP50975.1 AKP50975.1 AKP50967.1 AKP50967.1 AKP50951.1 AKP50951.1 AKP50794.1 AKP50794.1 AKP50777.1 AKP50777.1 AKP50725.1 AKP50725.1 AKP50724.1 AKP50724.1 tpiA tpiA nagB nagB AKP50620.1 AKP50620.1 AKP50591.1 AKP50591.1 AKP50550.1 AKP50550.1 gpmI gpmI AKP50470.1 AKP50470.1 AKP50458.1 AKP50458.1 AKP50451.1 AKP50451.1 AKP50446.1 AKP50446.1 AKP50433.1 AKP50433.1 hemL hemL AKP50317.1 AKP50317.1 AKP50261.1 AKP50261.1 AKP50192.1 AKP50192.1 AKP50148.1 AKP50148.1 truA truA fcl fcl AKP50054.1 AKP50054.1 AKP49913.1 AKP49913.1 queA queA AKP49887.1 AKP49887.1 AKP49885.1 AKP49885.1 AKP49881.1 AKP49881.1 AKP49848.1 AKP49848.1 AKP49815.1 AKP49815.1 AKP49803.1 AKP49803.1 AKP49802.1 AKP49802.1 AKP49769.1 AKP49769.1 pgi pgi AKP49740.1 AKP49740.1 AKP49736.1 AKP49736.1 AKP49731.1 AKP49731.1 AKP49705.1 AKP49705.1 AKP49689.1 AKP49689.1 AKP49625.1 AKP49625.1 AKP49623.1 AKP49623.1 AKP49622.1 AKP49622.1 AKP49593.1 AKP49593.1 AKP49588.1 AKP49588.1 AKP49575.1 AKP49575.1 AKP49550.1 AKP49550.1 AKP49518.1 AKP49518.1 AKP54147.1 AKP54147.1 xylA xylA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
truA-2tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (263 aa)
AKP54133.1Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I. (575 aa)
gyrBDNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (653 aa)
AKP54070.1Peptidyl-prolyl cis-trans isomerase PpiA; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (162 aa)
queA-2S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). (407 aa)
AKP54042.1N-acylglucosamine 2-epimerase. (385 aa)
AKP54022.1Glucosamine-6-phosphate deaminase. (249 aa)
truBtRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. (229 aa)
AKP53945.1Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (385 aa)
AKP53788.1N-acylglucosamine 2-epimerase. (460 aa)
AKP53751.1DNA topoisomerase III. (767 aa)
AKP53731.1Hypothetical protein. (326 aa)
AKP53719.1Hypothetical protein. (311 aa)
AKP53677.1ApaG domain protein. (128 aa)
AKP53563.1Phosphoribosylanthranilate isomerase. (209 aa)
AKP53560.1Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. (217 aa)
gyrADNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (848 aa)
AKP53492.1tRNA pseudouridine synthase C. (241 aa)
AKP53349.1Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer. (390 aa)
AKP53275.1L-fucose mutarotase, type 2. (109 aa)
AKP53083.1Alkaline ceramidase domain protein. (496 aa)
AKP53082.1Hydroxypyruvate isomerase; Belongs to the hyi family. (304 aa)
AKP53066.1Hypothetical protein. (463 aa)
AKP53050.1Hypothetical protein. (294 aa)
topADNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (784 aa)
AKP52808.1Alkaline ceramidase domain protein. (529 aa)
AKP52741.1Peptidyl-prolyl cis-trans isomerase. (142 aa)
araAL-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (492 aa)
AKP52592.1Transcription-repair coupling factor. (462 aa)
AKP52498.1Isochorismate synthase. (403 aa)
AKP52463.1Topoisomerase IV subunit A. (862 aa)
AKP52462.1Topoisomerase IV subunit B. (634 aa)
trpFN-(5'-phosphoribosyl)anthranilate isomerase; Belongs to the TrpF family. (217 aa)
groL60 kDa chaperonin; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. (542 aa)
AKP52320.1Glucosamine-6-phosphate deaminase. (248 aa)
AKP52295.1UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. (338 aa)
AKP52255.1Fucose isomerase. (471 aa)
AKP52192.1Cell division trigger factor. (442 aa)
murIGlutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. (271 aa)
hisA1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase. (240 aa)
AKP52089.1UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family. (365 aa)
AKP52042.1Putative secreted glycosyl hydrolase. (200 aa)
uxaCUronate isomerase. (475 aa)
AKP51972.1Chorismate mutase, type II. (368 aa)
AKP51806.1SSS sodium solute transporter superfamily. (852 aa)
AKP51707.1L-fucose isomerase-like protein; Catalyzes the conversion of L-arabinose to L-ribulose. (497 aa)
AKP51665.1L-rhamnose mutarotase; Involved in the anomeric conversion of L-rhamnose. (103 aa)
AKP51664.1FKBP-type peptidyl-prolyl cis-trans isomerase SlyD. (165 aa)
AKP51625.1Hypothetical protein. (283 aa)
AKP51624.1PpiC-type peptidyl-prolyl cis-trans isomerase. (477 aa)
AKP51481.1Neutral/alkaline non-lysosomal ceramidase. (442 aa)
AKP51453.1Muconate cycloisomerase. (336 aa)
dapFDiaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. (258 aa)
purEN5-carboxyaminoimidazole ribonucleotide mutase; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR). (175 aa)
AKP51042.1Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (824 aa)
AKP51030.1Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (344 aa)
AKP51018.1Peptidyl-prolyl cis-trans isomerase. (186 aa)
AKP51017.1Peptidyl-prolyl cis-trans isomerase. (181 aa)
AKP51016.1Peptidyl-prolyl cis-trans isomerase. (309 aa)
AKP50975.1Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. (218 aa)
AKP50967.1Hydroxypyruvate isomerase; Belongs to the hyi family. (306 aa)
AKP50951.1L-rhamnose isomerase. (427 aa)
AKP50794.1dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. (183 aa)
AKP50777.1Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. (243 aa)
AKP50725.1Hypothetical protein. (355 aa)
AKP50724.1Hypothetical protein. (401 aa)
tpiATriosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family. (253 aa)
nagBGlucosamine-6-phosphate deaminase; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion. (242 aa)
AKP50620.1Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. (346 aa)
AKP50591.1Alkaline ceramidase domain protein. (482 aa)
AKP50550.1Hypothetical protein. (696 aa)
gpmI2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. (502 aa)
AKP50470.1PpiC-type peptidyl-prolyl cis-trans isomerase. (704 aa)
AKP50458.1Ribose 5-phosphate isomerase B. (145 aa)
AKP50451.1Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (384 aa)
AKP50446.1Phosphomannomutase. (462 aa)
AKP50433.1Hypothetical protein. (318 aa)
hemLGlutamate-1-semialdehyde 2,1-aminomutase. (428 aa)
AKP50317.1Pseudouridine synthase. (243 aa)
AKP50261.1Alanine racemase domain protein. (356 aa)
AKP50192.1Hypothetical protein. (566 aa)
AKP50148.1Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (283 aa)
truAtRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (281 aa)
fclGDP-L-fucose synthase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction. (317 aa)
AKP50054.1Hydroxypyruvate isomerase. (295 aa)
AKP49913.1Pseudouridine synthase. (237 aa)
queAS-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). (349 aa)
AKP49887.1Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (443 aa)
AKP49885.1Hypothetical protein. (460 aa)
AKP49881.1Hypothetical protein. (451 aa)
AKP49848.1Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (261 aa)
AKP49815.1Glucosamine-6-phosphate deaminase. (310 aa)
AKP49803.1Transcription-repair coupling factor. (468 aa)
AKP49802.1Transcription-repair coupling factor. (459 aa)
AKP49769.1L-fucose isomerase 2 domain protein. (531 aa)
pgiGlucose-6-phosphate isomerase; Belongs to the GPI family. (548 aa)
AKP49740.1Kelch repeat type 1-containing protein. (321 aa)
AKP49736.1Phosphomannomutase. (348 aa)
AKP49731.1Glucosamine-6-phosphate deaminase. (775 aa)
AKP49705.1Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (144 aa)
AKP49689.1Putative secreted glycosyl hydrolase. (201 aa)
AKP49625.1Alkaline ceramidase domain protein. (516 aa)
AKP49623.1Hypothetical protein. (496 aa)
AKP49622.1Transcription-repair coupling factor. (486 aa)
AKP49593.1Aminotransferase class-III. (771 aa)
AKP49588.1Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (437 aa)
AKP49575.1Galactose mutarotase related enzyme. (297 aa)
AKP49550.1Hypothetical protein. (421 aa)
AKP49518.1Alkaline ceramidase domain protein. (454 aa)
AKP54147.1Hypothetical protein. (336 aa)
xylAXylose isomerase; Belongs to the xylose isomerase family. (460 aa)
Your Current Organism:
Cyclobacterium amurskyense
NCBI taxonomy Id: 320787
Other names: C. amurskyense, Cyclobacterium amurskyense Nedashkovskaya et al. 2005 emend. Hahnke et al. 2016, KCTC 12363, KMM 6143, LMG 23026, LMG:23026
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