(5 nodes) Bile pigment network (Synechococcus sp. JA33Ab)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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co-expression

protein homology

Your Input:
	cpcA-1	Phycocyanin, alpha subunit; Identified by similarity to SP:P07121; match to protein family HMM PF00502. (162 aa)
	cpcB-1	Phycocyanin, beta subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01339. (172 aa)
	cpcC	Phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod; Identified by similarity to SP:P11398; match to protein family HMM PF00427; match to protein family HMM PF01383; Belongs to the phycobilisome linker protein family. (285 aa)
	cpcA-2	Phycocyanin, alpha subunit; Identified by similarity to SP:P07121; match to protein family HMM PF00502; match to protein family HMM TIGR01338. (160 aa)
	cpcB-2	Phycocyanin, beta subunit; Identified by similarity to SP:P07120; match to protein family HMM PF00502. (172 aa)

Your Current Organism:

Synechococcus sp. JA33Ab

NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cpcA-1	cpcA-2	CYA_0220	CYA_2042	Phycocyanin, alpha subunit; Identified by similarity to SP:P07121; match to protein family HMM PF00502.	Phycocyanin, alpha subunit; Identified by similarity to SP:P07121; match to protein family HMM PF00502; match to protein family HMM TIGR01338.	0.902
cpcA-1	cpcB-1	CYA_0220	CYA_0221	Phycocyanin, alpha subunit; Identified by similarity to SP:P07121; match to protein family HMM PF00502.	Phycocyanin, beta subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01339.	0.990
cpcA-1	cpcB-2	CYA_0220	CYA_2043	Phycocyanin, alpha subunit; Identified by similarity to SP:P07121; match to protein family HMM PF00502.	Phycocyanin, beta subunit; Identified by similarity to SP:P07120; match to protein family HMM PF00502.	0.981
cpcA-1	cpcC	CYA_0220	CYA_2041	Phycocyanin, alpha subunit; Identified by similarity to SP:P07121; match to protein family HMM PF00502.	Phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod; Identified by similarity to SP:P11398; match to protein family HMM PF00427; match to protein family HMM PF01383; Belongs to the phycobilisome linker protein family.	0.958
cpcA-2	cpcA-1	CYA_2042	CYA_0220	Phycocyanin, alpha subunit; Identified by similarity to SP:P07121; match to protein family HMM PF00502; match to protein family HMM TIGR01338.	Phycocyanin, alpha subunit; Identified by similarity to SP:P07121; match to protein family HMM PF00502.	0.902
cpcA-2	cpcB-1	CYA_2042	CYA_0221	Phycocyanin, alpha subunit; Identified by similarity to SP:P07121; match to protein family HMM PF00502; match to protein family HMM TIGR01338.	Phycocyanin, beta subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01339.	0.981
cpcA-2	cpcB-2	CYA_2042	CYA_2043	Phycocyanin, alpha subunit; Identified by similarity to SP:P07121; match to protein family HMM PF00502; match to protein family HMM TIGR01338.	Phycocyanin, beta subunit; Identified by similarity to SP:P07120; match to protein family HMM PF00502.	0.989
cpcA-2	cpcC	CYA_2042	CYA_2041	Phycocyanin, alpha subunit; Identified by similarity to SP:P07121; match to protein family HMM PF00502; match to protein family HMM TIGR01338.	Phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod; Identified by similarity to SP:P11398; match to protein family HMM PF00427; match to protein family HMM PF01383; Belongs to the phycobilisome linker protein family.	0.974
cpcB-1	cpcA-1	CYA_0221	CYA_0220	Phycocyanin, beta subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01339.	Phycocyanin, alpha subunit; Identified by similarity to SP:P07121; match to protein family HMM PF00502.	0.990
cpcB-1	cpcA-2	CYA_0221	CYA_2042	Phycocyanin, beta subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01339.	Phycocyanin, alpha subunit; Identified by similarity to SP:P07121; match to protein family HMM PF00502; match to protein family HMM TIGR01338.	0.981
cpcB-1	cpcB-2	CYA_0221	CYA_2043	Phycocyanin, beta subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01339.	Phycocyanin, beta subunit; Identified by similarity to SP:P07120; match to protein family HMM PF00502.	0.901
cpcB-1	cpcC	CYA_0221	CYA_2041	Phycocyanin, beta subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01339.	Phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod; Identified by similarity to SP:P11398; match to protein family HMM PF00427; match to protein family HMM PF01383; Belongs to the phycobilisome linker protein family.	0.958
cpcB-2	cpcA-1	CYA_2043	CYA_0220	Phycocyanin, beta subunit; Identified by similarity to SP:P07120; match to protein family HMM PF00502.	Phycocyanin, alpha subunit; Identified by similarity to SP:P07121; match to protein family HMM PF00502.	0.981
cpcB-2	cpcA-2	CYA_2043	CYA_2042	Phycocyanin, beta subunit; Identified by similarity to SP:P07120; match to protein family HMM PF00502.	Phycocyanin, alpha subunit; Identified by similarity to SP:P07121; match to protein family HMM PF00502; match to protein family HMM TIGR01338.	0.989
cpcB-2	cpcB-1	CYA_2043	CYA_0221	Phycocyanin, beta subunit; Identified by similarity to SP:P07120; match to protein family HMM PF00502.	Phycocyanin, beta subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01339.	0.901
cpcB-2	cpcC	CYA_2043	CYA_2041	Phycocyanin, beta subunit; Identified by similarity to SP:P07120; match to protein family HMM PF00502.	Phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod; Identified by similarity to SP:P11398; match to protein family HMM PF00427; match to protein family HMM PF01383; Belongs to the phycobilisome linker protein family.	0.968
cpcC	cpcA-1	CYA_2041	CYA_0220	Phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod; Identified by similarity to SP:P11398; match to protein family HMM PF00427; match to protein family HMM PF01383; Belongs to the phycobilisome linker protein family.	Phycocyanin, alpha subunit; Identified by similarity to SP:P07121; match to protein family HMM PF00502.	0.958
cpcC	cpcA-2	CYA_2041	CYA_2042	Phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod; Identified by similarity to SP:P11398; match to protein family HMM PF00427; match to protein family HMM PF01383; Belongs to the phycobilisome linker protein family.	Phycocyanin, alpha subunit; Identified by similarity to SP:P07121; match to protein family HMM PF00502; match to protein family HMM TIGR01338.	0.974
cpcC	cpcB-1	CYA_2041	CYA_0221	Phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod; Identified by similarity to SP:P11398; match to protein family HMM PF00427; match to protein family HMM PF01383; Belongs to the phycobilisome linker protein family.	Phycocyanin, beta subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01339.	0.958
cpcC	cpcB-2	CYA_2041	CYA_2043	Phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod; Identified by similarity to SP:P11398; match to protein family HMM PF00427; match to protein family HMM PF01383; Belongs to the phycobilisome linker protein family.	Phycocyanin, beta subunit; Identified by similarity to SP:P07120; match to protein family HMM PF00502.	0.968

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