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cpcG1 cpcG1 cpcF cpcF cpcE-1 cpcE-1 cpcD cpcD cpcA-1 cpcA-1 cpcB-1 cpcB-1 CYA_0506 CYA_0506 CYA_0528 CYA_0528 apcB-1 apcB-1 CYA_1814 CYA_1814 CYA_1851 CYA_1851 cpcE-2 cpcE-2 cpcC cpcC cpcA-2 cpcA-2 cpcB-2 cpcB-2 apcC apcC apcB-2 apcB-2 apcA apcA apcD apcD cpcS2 cpcS2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
cpcG1Phycobilisome rod-core linker polypeptide cpcG1; Identified by similarity to SP:P29986; match to protein family HMM PF00427; Belongs to the phycobilisome linker protein family. (241 aa)
cpcFPhycocyanin alpha subunit phycocyanobilin lyase, CpcF subunit; Identified by match to protein family HMM PF02985; match to protein family HMM PF03130. (238 aa)
cpcE-1Phycocyanin alpha subunit phycocyanobilin lyase, CpcE subunit; Identified by match to protein family HMM PF02985; match to protein family HMM PF03130. (250 aa)
cpcDPhycobilisome 8.9 kDa linker polypeptide, phycocyanin-associated, rod; Identified by similarity to SP:P31966; match to protein family HMM PF01383. (86 aa)
cpcA-1Phycocyanin, alpha subunit; Identified by similarity to SP:P07121; match to protein family HMM PF00502. (162 aa)
cpcB-1Phycocyanin, beta subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01339. (172 aa)
CYA_0506Putative phycobilisome linker polypeptide, phycocyanin-associated, rod; Identified by match to protein family HMM PF01383. (163 aa)
CYA_0528Putative phycobilisome linker polypeptide; Identified by match to protein family HMM PF00427; Belongs to the phycobilisome linker protein family. (187 aa)
apcB-1Allophycocyanin, beta subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01337. (167 aa)
CYA_1814Putative phycobilisome 120 kDa linker polypeptide, core; Identified by match to protein family HMM PF00427; match to protein family HMM PF00502; Belongs to the phycobilisome linker protein family. (898 aa)
CYA_1851Putative phycobilisome 120 kDa linker polypeptide, core; Identified by match to protein family HMM PF00427; match to protein family HMM PF00502; Belongs to the phycobilisome linker protein family. (899 aa)
cpcE-2Phycocyanin alpha subunit phycocyanobilin lyase, CpcE subunit; Identified by match to protein family HMM PF03130. (275 aa)
cpcCPhycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod; Identified by similarity to SP:P11398; match to protein family HMM PF00427; match to protein family HMM PF01383; Belongs to the phycobilisome linker protein family. (285 aa)
cpcA-2Phycocyanin, alpha subunit; Identified by similarity to SP:P07121; match to protein family HMM PF00502; match to protein family HMM TIGR01338. (160 aa)
cpcB-2Phycocyanin, beta subunit; Identified by similarity to SP:P07120; match to protein family HMM PF00502. (172 aa)
apcCPhycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer. (67 aa)
apcB-2Allophycocyanin, beta subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01337. (161 aa)
apcAAllophycocyanin, alpha subunit; Identified by match to protein family HMM PF00502. (161 aa)
apcDAllophycocyanin alpha, B subunit; Identified by similarity to SP:P80556; match to protein family HMM PF00502. (161 aa)
cpcS2CpeS-like protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins. (187 aa)
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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