5 items (Synechococcus sp. JA23Ba) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	psaE	Photosystem I reaction center subunit IV; Identified by match to protein family HMM PF02427. (74 aa)
	psaD	Photosystem I reaction center subunit II; Identified by match to protein family HMM PF02531. (141 aa)
	psaL-1	Photosystem I reaction center subunit XI; Identified by match to protein family HMM PF02605. (156 aa)
	psaF	Photosystem I reaction center subunit III; Identified by match to protein family HMM PF02507. (181 aa)
	psaL-2	Photosystem I reaction center subunit XI; Identified by match to protein family HMM PF02605. (159 aa)

Your Current Organism:

Synechococcus sp. JA23Ba

NCBI taxonomy Id: 321332
Other names: Cyanobacteria bacterium Yellowstone B-Prime, S. sp. JA-2-3B'a(2-13), Synechococcus sp. JA-2-3B'a(2-13)

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
psaD	psaE	CYB_2253	CYB_1245	Photosystem I reaction center subunit II; Identified by match to protein family HMM PF02531.	Photosystem I reaction center subunit IV; Identified by match to protein family HMM PF02427.	0.999
psaD	psaF	CYB_2253	CYB_2824	Photosystem I reaction center subunit II; Identified by match to protein family HMM PF02531.	Photosystem I reaction center subunit III; Identified by match to protein family HMM PF02507.	0.999
psaD	psaL-1	CYB_2253	CYB_1499	Photosystem I reaction center subunit II; Identified by match to protein family HMM PF02531.	Photosystem I reaction center subunit XI; Identified by match to protein family HMM PF02605.	0.998
psaD	psaL-2	CYB_2253	CYB_2826	Photosystem I reaction center subunit II; Identified by match to protein family HMM PF02531.	Photosystem I reaction center subunit XI; Identified by match to protein family HMM PF02605.	0.995
psaE	psaD	CYB_1245	CYB_2253	Photosystem I reaction center subunit IV; Identified by match to protein family HMM PF02427.	Photosystem I reaction center subunit II; Identified by match to protein family HMM PF02531.	0.999
psaE	psaF	CYB_1245	CYB_2824	Photosystem I reaction center subunit IV; Identified by match to protein family HMM PF02427.	Photosystem I reaction center subunit III; Identified by match to protein family HMM PF02507.	0.999
psaE	psaL-1	CYB_1245	CYB_1499	Photosystem I reaction center subunit IV; Identified by match to protein family HMM PF02427.	Photosystem I reaction center subunit XI; Identified by match to protein family HMM PF02605.	0.996
psaE	psaL-2	CYB_1245	CYB_2826	Photosystem I reaction center subunit IV; Identified by match to protein family HMM PF02427.	Photosystem I reaction center subunit XI; Identified by match to protein family HMM PF02605.	0.996
psaF	psaD	CYB_2824	CYB_2253	Photosystem I reaction center subunit III; Identified by match to protein family HMM PF02507.	Photosystem I reaction center subunit II; Identified by match to protein family HMM PF02531.	0.999
psaF	psaE	CYB_2824	CYB_1245	Photosystem I reaction center subunit III; Identified by match to protein family HMM PF02507.	Photosystem I reaction center subunit IV; Identified by match to protein family HMM PF02427.	0.999
psaF	psaL-1	CYB_2824	CYB_1499	Photosystem I reaction center subunit III; Identified by match to protein family HMM PF02507.	Photosystem I reaction center subunit XI; Identified by match to protein family HMM PF02605.	0.996
psaF	psaL-2	CYB_2824	CYB_2826	Photosystem I reaction center subunit III; Identified by match to protein family HMM PF02507.	Photosystem I reaction center subunit XI; Identified by match to protein family HMM PF02605.	0.997
psaL-1	psaD	CYB_1499	CYB_2253	Photosystem I reaction center subunit XI; Identified by match to protein family HMM PF02605.	Photosystem I reaction center subunit II; Identified by match to protein family HMM PF02531.	0.998
psaL-1	psaE	CYB_1499	CYB_1245	Photosystem I reaction center subunit XI; Identified by match to protein family HMM PF02605.	Photosystem I reaction center subunit IV; Identified by match to protein family HMM PF02427.	0.996
psaL-1	psaF	CYB_1499	CYB_2824	Photosystem I reaction center subunit XI; Identified by match to protein family HMM PF02605.	Photosystem I reaction center subunit III; Identified by match to protein family HMM PF02507.	0.996
psaL-1	psaL-2	CYB_1499	CYB_2826	Photosystem I reaction center subunit XI; Identified by match to protein family HMM PF02605.	Photosystem I reaction center subunit XI; Identified by match to protein family HMM PF02605.	0.908
psaL-2	psaD	CYB_2826	CYB_2253	Photosystem I reaction center subunit XI; Identified by match to protein family HMM PF02605.	Photosystem I reaction center subunit II; Identified by match to protein family HMM PF02531.	0.995
psaL-2	psaE	CYB_2826	CYB_1245	Photosystem I reaction center subunit XI; Identified by match to protein family HMM PF02605.	Photosystem I reaction center subunit IV; Identified by match to protein family HMM PF02427.	0.996
psaL-2	psaF	CYB_2826	CYB_2824	Photosystem I reaction center subunit XI; Identified by match to protein family HMM PF02605.	Photosystem I reaction center subunit III; Identified by match to protein family HMM PF02507.	0.997
psaL-2	psaL-1	CYB_2826	CYB_1499	Photosystem I reaction center subunit XI; Identified by match to protein family HMM PF02605.	Photosystem I reaction center subunit XI; Identified by match to protein family HMM PF02605.	0.908