(6 nodes) ABC-type polyamine transporter activity network (Synechococcus sp. JA23Ba)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CYB_0132	ABC transporter, permease protein; Identified by match to protein family HMM PF00528. (309 aa)
	CYB_0024	ABC transporter, ATP-binding protein; Identified by similarity to SP:P31134; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily. (368 aa)
	CYB_0234	Polyamine/opine/phosphonate uptake ABC transporter (POPT) family, permease protein; Identified by match to protein family HMM PF00528. (310 aa)
	potB	Spermidine/putrescine ABC transporter, permease protein; Identified by similarity to SP:P23860; match to protein family HMM PF00528. (316 aa)
	potA	Spermidine/putrescine ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily. (384 aa)
	CYB_2079	Polyamine ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01187; Belongs to the ABC transporter superfamily. (372 aa)

Your Current Organism:

Synechococcus sp. JA23Ba

NCBI taxonomy Id: 321332
Other names: Cyanobacteria bacterium Yellowstone B-Prime, S. sp. JA-2-3B'a(2-13), Synechococcus sp. JA-2-3B'a(2-13)

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CYB_0024	CYB_0132	CYB_0024	CYB_0132	ABC transporter, ATP-binding protein; Identified by similarity to SP:P31134; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.975
CYB_0024	CYB_0234	CYB_0024	CYB_0234	ABC transporter, ATP-binding protein; Identified by similarity to SP:P31134; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	Polyamine/opine/phosphonate uptake ABC transporter (POPT) family, permease protein; Identified by match to protein family HMM PF00528.	0.975
CYB_0024	CYB_2079	CYB_0024	CYB_2079	ABC transporter, ATP-binding protein; Identified by similarity to SP:P31134; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	Polyamine ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01187; Belongs to the ABC transporter superfamily.	0.915
CYB_0024	potA	CYB_0024	CYB_1301	ABC transporter, ATP-binding protein; Identified by similarity to SP:P31134; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	Spermidine/putrescine ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	0.459
CYB_0024	potB	CYB_0024	CYB_1299	ABC transporter, ATP-binding protein; Identified by similarity to SP:P31134; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	Spermidine/putrescine ABC transporter, permease protein; Identified by similarity to SP:P23860; match to protein family HMM PF00528.	0.804
CYB_0132	CYB_0024	CYB_0132	CYB_0024	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, ATP-binding protein; Identified by similarity to SP:P31134; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	0.975
CYB_0132	CYB_0234	CYB_0132	CYB_0234	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Polyamine/opine/phosphonate uptake ABC transporter (POPT) family, permease protein; Identified by match to protein family HMM PF00528.	0.907
CYB_0132	CYB_2079	CYB_0132	CYB_2079	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Polyamine ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01187; Belongs to the ABC transporter superfamily.	0.971
CYB_0132	potA	CYB_0132	CYB_1301	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Spermidine/putrescine ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	0.750
CYB_0234	CYB_0024	CYB_0234	CYB_0024	Polyamine/opine/phosphonate uptake ABC transporter (POPT) family, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, ATP-binding protein; Identified by similarity to SP:P31134; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	0.975
CYB_0234	CYB_0132	CYB_0234	CYB_0132	Polyamine/opine/phosphonate uptake ABC transporter (POPT) family, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.907
CYB_0234	CYB_2079	CYB_0234	CYB_2079	Polyamine/opine/phosphonate uptake ABC transporter (POPT) family, permease protein; Identified by match to protein family HMM PF00528.	Polyamine ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01187; Belongs to the ABC transporter superfamily.	0.988
CYB_0234	potA	CYB_0234	CYB_1301	Polyamine/opine/phosphonate uptake ABC transporter (POPT) family, permease protein; Identified by match to protein family HMM PF00528.	Spermidine/putrescine ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	0.860
CYB_2079	CYB_0024	CYB_2079	CYB_0024	Polyamine ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01187; Belongs to the ABC transporter superfamily.	ABC transporter, ATP-binding protein; Identified by similarity to SP:P31134; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	0.915
CYB_2079	CYB_0132	CYB_2079	CYB_0132	Polyamine ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01187; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.971
CYB_2079	CYB_0234	CYB_2079	CYB_0234	Polyamine ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01187; Belongs to the ABC transporter superfamily.	Polyamine/opine/phosphonate uptake ABC transporter (POPT) family, permease protein; Identified by match to protein family HMM PF00528.	0.988
CYB_2079	potA	CYB_2079	CYB_1301	Polyamine ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01187; Belongs to the ABC transporter superfamily.	Spermidine/putrescine ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	0.421
CYB_2079	potB	CYB_2079	CYB_1299	Polyamine ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01187; Belongs to the ABC transporter superfamily.	Spermidine/putrescine ABC transporter, permease protein; Identified by similarity to SP:P23860; match to protein family HMM PF00528.	0.885
potA	CYB_0024	CYB_1301	CYB_0024	Spermidine/putrescine ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	ABC transporter, ATP-binding protein; Identified by similarity to SP:P31134; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	0.459
potA	CYB_0132	CYB_1301	CYB_0132	Spermidine/putrescine ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.750