STRINGSTRING
petH petH psbJ psbJ psaL-1 psaL-1 psbF psbF psbL psbL petJ petJ psbO psbO psbW psbW prc-2 prc-2 petB petB psbZ psbZ CYB_2236 CYB_2236 psaD psaD psbI psbI CYB_2506 CYB_2506 cpcC cpcC psaF psaF psaE psaE CYB_1136 CYB_1136 CYB_0945 CYB_0945 psbK psbK
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
petHferredoxin--NADP reductase; Identified by similarity to SP:P00454; match to protein family HMM PF00175. (296 aa)
psbJPhotosystem II reaction center protein PsbJ; One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. (39 aa)
psaL-1Photosystem I reaction center subunit XI; Identified by match to protein family HMM PF02605. (156 aa)
psbFCytochrome b559, beta subunit; This b-type cytochrome is tightly associated with the reaction center of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. Belongs to the PsbE/PsbF family. (43 aa)
psbLPhotosystem II reaction center protein PsbL; One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. This subunit is found at the monomer-monomer interface and is required for correct PSII assembly and/or dimerization. (41 aa)
petJCytochrome c6; Identified by similarity to SP:P28596; match to protein family HMM PF00034. (113 aa)
psbOPhotosystem II manganese-stabilizing protein; Identified by match to protein family HMM PF01716. (264 aa)
psbWPhotosystem II reaction center protein PsbW; Identified by match to protein family HMM PF03912; Belongs to the Psb28 family. (104 aa)
prc-2C-terminal processing peptidase; Identified by similarity to SP:Q55669; match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; Belongs to the peptidase S41A family. (425 aa)
petBCytochrome b6; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. (229 aa)
psbZYCF9, conserved hypothetical protein; Controls the interaction of photosystem II (PSII) cores with the light-harvesting antenna; Belongs to the PsbZ family. (61 aa)
CYB_2236S4 domain protein; Identified by match to protein family HMM PF01479. (259 aa)
psaDPhotosystem I reaction center subunit II; Identified by match to protein family HMM PF02531. (141 aa)
psbIPhotosystem II reaction center protein PsbI; One of the components of the core complex of photosystem II (PSII), required for its stability and/or assembly. PSII is a light- driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. (38 aa)
CYB_2506Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; Identified by match to protein family HMM PF00160. (368 aa)
cpcCPhycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod; Identified by similarity to SP:P11398; match to protein family HMM PF00427; match to protein family HMM PF01383; Belongs to the phycobilisome linker protein family. (285 aa)
psaFPhotosystem I reaction center subunit III; Identified by match to protein family HMM PF02507. (181 aa)
psaEPhotosystem I reaction center subunit IV; Identified by match to protein family HMM PF02427. (74 aa)
CYB_1136Conserved hypothetical protein. (132 aa)
CYB_0945Conserved hypothetical protein; Identified by similarity to GB:BAC92118.1. (103 aa)
psbKPhotosystem II reaction center protein PsbK; One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. (42 aa)
Your Current Organism:
Synechococcus sp. JA23Ba
NCBI taxonomy Id: 321332
Other names: Cyanobacteria bacterium Yellowstone B-Prime, S. sp. JA-2-3B'a(2-13), Synechococcus sp. JA-2-3B'a(2-13)
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