STRINGSTRING
CYB_2629 CYB_2629 CYB_2631 CYB_2631 CYB_2668 CYB_2668 CYB_2801 CYB_2801 psaF psaF CYB_2876 CYB_2876 CYB_2893 CYB_2893 CYB_0145 CYB_0145 phnE-1 phnE-1 CYB_0190 CYB_0190 cysW cysW CYB_2496 CYB_2496 ndhD1 ndhD1 CYB_0320 CYB_0320 CYB_0579 CYB_0579 CYB_0390 CYB_0390 CYB_0418 CYB_0418 CYB_0024 CYB_0024 narB narB psbK psbK CYB_2505 CYB_2505 CYB_2507 CYB_2507 upgA upgA psbI psbI tatA-2 tatA-2 CYB_2385 CYB_2385 CYB_2383 CYB_2383 CYB_2374 CYB_2374 ndhK ndhK CYB_2302 CYB_2302 psaD psaD CYB_2236 CYB_2236 CYB_2079 CYB_2079 psbZ psbZ CYB_2035 CYB_2035 ndhD2 ndhD2 tatA-1 tatA-1 CYB_1898 CYB_1898 CYB_1811 CYB_1811 CYB_1806 CYB_1806 CYB_1798 CYB_1798 CYB_1651 CYB_1651 psbW psbW CYB_1590 CYB_1590 psaL-1 psaL-1 psbJ psbJ psbL psbL psbF psbF CYB_1489 CYB_1489 phnE-3 phnE-3 phnE-2 phnE-2 CYB_1396 CYB_1396 CYB_1357 CYB_1357 CYB_1337 CYB_1337 potA potA ndhE ndhE CYB_1163 CYB_1163 CYB_1136 CYB_1136 tatC tatC ndhI ndhI CYB_0707 CYB_0707
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CYB_2629Transporter, lead (Pb2+) uptake porter (PbrT) family; Identified by similarity to GB:CAC28871.1; match to protein family HMM PF03239. (267 aa)
CYB_2631ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (226 aa)
CYB_2668TrkA domain protein; Identified by match to protein family HMM PF02080; match to protein family HMM PF02254. (738 aa)
CYB_2801Transporter, monovalent cation:proton antiporter-2 (CPA2) family; Identified by match to protein family HMM PF00999; match to protein family HMM PF02254; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. (635 aa)
psaFPhotosystem I reaction center subunit III; Identified by match to protein family HMM PF02507. (181 aa)
CYB_2876NADH-ubiquinone/plastoquinone oxidoreductase, subunit 4 family; Identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972. (511 aa)
CYB_2893Putative sn-glycerol-3-phosphate ABC transporter, permease protein; Identified by similarity to SP:P10906; match to protein family HMM PF00528. (262 aa)
CYB_0145Manganese/zinc/iron chelate ABC ransporter (MZT) family, ATP-binding protein; Identified by similarity to SP:Q55281; match to protein family HMM PF00005. (266 aa)
phnE-1Phosphonate ABC transporter, permease protein; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01097. (272 aa)
CYB_0190Ferric iron ABC transporter (FeT) family, ATP-binding protein; Identified by match to protein family HMM PF00005. (407 aa)
cysWSulfate ABC transporter, permease protein CysW; Identified by similarity to SP:P27370; match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02140. (275 aa)
CYB_2496Iron-sulfur cluster-binding protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (75 aa)
ndhD1NADH-ubiquinone/plastoquinone oxidoreductase, subunit 4 family; NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4 family. (528 aa)
CYB_0320Transporter, monovalent cation:proton antiporter-2 (CPA2) family; Identified by match to protein family HMM PF00999. (784 aa)
CYB_0579Quaternary amine uptake ABC transporter (QAT) family, periplasmic substrate-binding protein; Identified by match to protein family HMM PF04069. (307 aa)
CYB_0390Carbohydrate uptake ABC transporter 2 (CUT2) family, ATP-binding protein; Identified by match to protein family HMM PF00005. (520 aa)
CYB_0418Ferredoxin, 4Fe-4S; Identified by match to protein family HMM PF00037. (97 aa)
CYB_0024ABC transporter, ATP-binding protein; Identified by similarity to SP:P31134; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily. (368 aa)
narBNitrate reductase; Identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily. (711 aa)
psbKPhotosystem II reaction center protein PsbK; One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. (42 aa)
CYB_2505Putative membrane protein; Identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056; Belongs to the MlaE permease family. (252 aa)
CYB_2507Succinate dehydrogenase/fumarate reductase, iron-sulfur protein; Identified by match to protein family HMM TIGR00384. (343 aa)
upgAGlycerol-3-phosphate ABC transporter, permease protein; Identified by similarity to SP:P10905; match to protein family HMM PF00528. (350 aa)
psbIPhotosystem II reaction center protein PsbI; One of the components of the core complex of photosystem II (PSII), required for its stability and/or assembly. PSII is a light- driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. (38 aa)
tatA-2Twin-arginine translocation protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. (114 aa)
CYB_2385Putative membrane protein, YjgP/YjgQ family; Identified by match to protein family HMM PF03739. (400 aa)
CYB_2383Hydrophobic amino acid uptake transporter (HAAT) ABC transporter family, ATP-binding protein; Identified by match to protein family HMM PF00005. (242 aa)
CYB_2374Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037. (134 aa)
ndhKNADH-ubiquinone/plastoquinone oxidoreductase, K subunit; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration; Belongs to the complex I 20 kDa subunit family. (244 aa)
CYB_2302Putative permease, YjgP/YjgQ family; Identified by match to protein family HMM PF03739. (362 aa)
psaDPhotosystem I reaction center subunit II; Identified by match to protein family HMM PF02531. (141 aa)
CYB_2236S4 domain protein; Identified by match to protein family HMM PF01479. (259 aa)
CYB_2079Polyamine ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01187; Belongs to the ABC transporter superfamily. (372 aa)
psbZYCF9, conserved hypothetical protein; Controls the interaction of photosystem II (PSII) cores with the light-harvesting antenna; Belongs to the PsbZ family. (61 aa)
CYB_2035Putative cobalamin biosynthesis protein CbiM; Identified by match to protein family HMM PF01891. (233 aa)
ndhD2NADH-ubiquinone/plastoquinone oxidoreductase, subunit 4 family; NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4 family. (534 aa)
tatA-1Sec-independent protein translocase protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. (81 aa)
CYB_1898ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (216 aa)
CYB_1811NADH-ubiquinone/plastoquinone oxidoreductase, subunit 4 family; Identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972. (502 aa)
CYB_1806Potassium transporter, voltage-gated ion channel (VIC) family; Identified by match to protein family HMM PF02080; match to protein family HMM PF02254; match to protein family HMM PF07885. (349 aa)
CYB_1798Putative cobalt ABC transporter (CoT) family, ATP-binding protein; Identified by match to protein family HMM PF00005. (241 aa)
CYB_1651Sugar ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (507 aa)
psbWPhotosystem II reaction center protein PsbW; Identified by match to protein family HMM PF03912; Belongs to the Psb28 family. (104 aa)
CYB_1590Carbohydrate uptake ABC transporter-1 (CUT1) family, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily. (373 aa)
psaL-1Photosystem I reaction center subunit XI; Identified by match to protein family HMM PF02605. (156 aa)
psbJPhotosystem II reaction center protein PsbJ; One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. (39 aa)
psbLPhotosystem II reaction center protein PsbL; One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. This subunit is found at the monomer-monomer interface and is required for correct PSII assembly and/or dimerization. (41 aa)
psbFCytochrome b559, beta subunit; This b-type cytochrome is tightly associated with the reaction center of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. Belongs to the PsbE/PsbF family. (43 aa)
CYB_1489Carbohydrate uptake ABC transporter-2 (CUT2) family, ATP-binding protein, truncation. (90 aa)
phnE-3Phosphonate ABC transporter, permease protein; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01097. (270 aa)
phnE-2Phosphonate ABC transporter, permease protein; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01097. (269 aa)
CYB_1396Carbohydrate uptake ABC transporter-2 (CUT2) family, ATP-binding protein, truncation. (80 aa)
CYB_1357Putative membrane protein, YjgP/YjgQ family; Identified by match to protein family HMM PF03739. (370 aa)
CYB_1337K+ transporter, Trk family; Identified by match to protein family HMM PF01210; match to protein family HMM PF02080; match to protein family HMM PF02254; match to protein family HMM PF03446. (229 aa)
potASpermidine/putrescine ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily. (384 aa)
ndhENADH-ubiquinone/plastoquinone oxidoreductase, subunit 4L family; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration. (102 aa)
CYB_1163Manganese/zinc/iron chelate ABC transporter (MZT) family, ATP-binding protein; Identified by match to protein family HMM PF00005. (253 aa)
CYB_1136Conserved hypothetical protein. (132 aa)
tatCSec-independent protein translocase TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. (260 aa)
ndhINADH-ubiquinone/plastoquinone oxidoreductase, I subunit; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient; Belongs to the complex I 23 kDa subunit family. (210 aa)
CYB_0707Cation transporter, voltage-gated ion channel (VIC) family; Identified by match to protein family HMM PF00520; match to protein family HMM PF07885. (271 aa)
Your Current Organism:
Synechococcus sp. JA23Ba
NCBI taxonomy Id: 321332
Other names: Cyanobacteria bacterium Yellowstone B-Prime, S. sp. JA-2-3B'a(2-13), Synechococcus sp. JA-2-3B'a(2-13)
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