(14 nodes) Globin-like superfamily network (Synechococcus sp. JA23Ba)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	apcD	Allophycocyanin alpha, B subunit; Identified by similarity to SP:P80556; match to protein family HMM PF00502. (161 aa)
	CYB_0574	Hypothetical protein; Identified by Glimmer2; putative. (197 aa)
	CYB_0431	Putative phycobilisome 120 kDa linker polypeptide, core; Identified by match to protein family HMM PF00427; match to protein family HMM PF00502; Belongs to the phycobilisome linker protein family. (897 aa)
	CYB_0575	Identified by match to protein family HMM PF00502. (156 aa)
	CYB_0627	Conserved hypothetical protein; Identified by similarity to PIR:S76420. (157 aa)
	cpcB-1	Phycocyanin, beta subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01339. (172 aa)
	cpcA-1	Phycocyanin, alpha subunit; Identified by similarity to SP:P07121; match to protein family HMM PF00502. (162 aa)
	apcA	Allophycocyanin, alpha subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01338. (161 aa)
	apcB-1	Allophycocyanin, beta subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01337. (161 aa)
	CYB_1485	Conserved hypothetical protein; Identified by similarity to GB:BAC09541.1. (183 aa)
	CYB_1837	Conserved hypothetical protein; Identified by similarity to GB:BAC09852.1. (145 aa)
	apcB-2	Allophycocyanin, beta subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01337. (167 aa)
	cpcA-2	Phycocyanin, alpha subunit; Identified by similarity to SP:P07121; match to protein family HMM PF00502; match to protein family HMM TIGR01338. (160 aa)
	cpcB-2	Phycocyanin, beta subunit; Identified by similarity to SP:P07120; match to protein family HMM PF00502. (172 aa)

Your Current Organism:

Synechococcus sp. JA23Ba

NCBI taxonomy Id: 321332
Other names: Cyanobacteria bacterium Yellowstone B-Prime, S. sp. JA-2-3B'a(2-13), Synechococcus sp. JA-2-3B'a(2-13)

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CYB_0431	CYB_0575	CYB_0431	CYB_0575	Putative phycobilisome 120 kDa linker polypeptide, core; Identified by match to protein family HMM PF00427; match to protein family HMM PF00502; Belongs to the phycobilisome linker protein family.	Identified by match to protein family HMM PF00502.	0.497
CYB_0431	CYB_0627	CYB_0431	CYB_0627	Putative phycobilisome 120 kDa linker polypeptide, core; Identified by match to protein family HMM PF00427; match to protein family HMM PF00502; Belongs to the phycobilisome linker protein family.	Conserved hypothetical protein; Identified by similarity to PIR:S76420.	0.497
CYB_0431	apcA	CYB_0431	CYB_1438	Putative phycobilisome 120 kDa linker polypeptide, core; Identified by match to protein family HMM PF00427; match to protein family HMM PF00502; Belongs to the phycobilisome linker protein family.	Allophycocyanin, alpha subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01338.	0.999
CYB_0431	apcB-1	CYB_0431	CYB_1439	Putative phycobilisome 120 kDa linker polypeptide, core; Identified by match to protein family HMM PF00427; match to protein family HMM PF00502; Belongs to the phycobilisome linker protein family.	Allophycocyanin, beta subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01337.	0.999
CYB_0431	apcB-2	CYB_0431	CYB_2211	Putative phycobilisome 120 kDa linker polypeptide, core; Identified by match to protein family HMM PF00427; match to protein family HMM PF00502; Belongs to the phycobilisome linker protein family.	Allophycocyanin, beta subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01337.	0.999
CYB_0431	apcD	CYB_0431	CYB_0186	Putative phycobilisome 120 kDa linker polypeptide, core; Identified by match to protein family HMM PF00427; match to protein family HMM PF00502; Belongs to the phycobilisome linker protein family.	Allophycocyanin alpha, B subunit; Identified by similarity to SP:P80556; match to protein family HMM PF00502.	0.871
CYB_0431	cpcA-1	CYB_0431	CYB_0940	Putative phycobilisome 120 kDa linker polypeptide, core; Identified by match to protein family HMM PF00427; match to protein family HMM PF00502; Belongs to the phycobilisome linker protein family.	Phycocyanin, alpha subunit; Identified by similarity to SP:P07121; match to protein family HMM PF00502.	0.946
CYB_0431	cpcA-2	CYB_0431	CYB_2738	Putative phycobilisome 120 kDa linker polypeptide, core; Identified by match to protein family HMM PF00427; match to protein family HMM PF00502; Belongs to the phycobilisome linker protein family.	Phycocyanin, alpha subunit; Identified by similarity to SP:P07121; match to protein family HMM PF00502; match to protein family HMM TIGR01338.	0.946
CYB_0431	cpcB-1	CYB_0431	CYB_0939	Putative phycobilisome 120 kDa linker polypeptide, core; Identified by match to protein family HMM PF00427; match to protein family HMM PF00502; Belongs to the phycobilisome linker protein family.	Phycocyanin, beta subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01339.	0.945
CYB_0431	cpcB-2	CYB_0431	CYB_2740	Putative phycobilisome 120 kDa linker polypeptide, core; Identified by match to protein family HMM PF00427; match to protein family HMM PF00502; Belongs to the phycobilisome linker protein family.	Phycocyanin, beta subunit; Identified by similarity to SP:P07120; match to protein family HMM PF00502.	0.832
CYB_0574	CYB_0575	CYB_0574	CYB_0575	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM PF00502.	0.693
CYB_0575	CYB_0431	CYB_0575	CYB_0431	Identified by match to protein family HMM PF00502.	Putative phycobilisome 120 kDa linker polypeptide, core; Identified by match to protein family HMM PF00427; match to protein family HMM PF00502; Belongs to the phycobilisome linker protein family.	0.497
CYB_0575	CYB_0574	CYB_0575	CYB_0574	Identified by match to protein family HMM PF00502.	Hypothetical protein; Identified by Glimmer2; putative.	0.693
CYB_0575	apcB-1	CYB_0575	CYB_1439	Identified by match to protein family HMM PF00502.	Allophycocyanin, beta subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01337.	0.495
CYB_0575	apcB-2	CYB_0575	CYB_2211	Identified by match to protein family HMM PF00502.	Allophycocyanin, beta subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01337.	0.495
CYB_0575	cpcA-1	CYB_0575	CYB_0940	Identified by match to protein family HMM PF00502.	Phycocyanin, alpha subunit; Identified by similarity to SP:P07121; match to protein family HMM PF00502.	0.482
CYB_0575	cpcA-2	CYB_0575	CYB_2738	Identified by match to protein family HMM PF00502.	Phycocyanin, alpha subunit; Identified by similarity to SP:P07121; match to protein family HMM PF00502; match to protein family HMM TIGR01338.	0.482
CYB_0575	cpcB-1	CYB_0575	CYB_0939	Identified by match to protein family HMM PF00502.	Phycocyanin, beta subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01339.	0.482
CYB_0575	cpcB-2	CYB_0575	CYB_2740	Identified by match to protein family HMM PF00502.	Phycocyanin, beta subunit; Identified by similarity to SP:P07120; match to protein family HMM PF00502.	0.482
CYB_0627	CYB_0431	CYB_0627	CYB_0431	Conserved hypothetical protein; Identified by similarity to PIR:S76420.	Putative phycobilisome 120 kDa linker polypeptide, core; Identified by match to protein family HMM PF00427; match to protein family HMM PF00502; Belongs to the phycobilisome linker protein family.	0.497