3 items (Synechococcus sp. JA23Ba) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	psaL	Photosystem II protein, PsbB/PsbC family; Identified by match to protein family HMM PF00421; match to protein family HMM PF02605. (526 aa)
	psaL-2	Photosystem I reaction center subunit XI; Identified by match to protein family HMM PF02605. (159 aa)
	psaL-1	Photosystem I reaction center subunit XI; Identified by match to protein family HMM PF02605. (156 aa)

Your Current Organism:

Synechococcus sp. JA23Ba

NCBI taxonomy Id: 321332
Other names: Cyanobacteria bacterium Yellowstone B-Prime, S. sp. JA-2-3B'a(2-13), Synechococcus sp. JA-2-3B'a(2-13)

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
psaL	psaL-2	CYB_2266	CYB_2826	Photosystem II protein, PsbB/PsbC family; Identified by match to protein family HMM PF00421; match to protein family HMM PF02605.	Photosystem I reaction center subunit XI; Identified by match to protein family HMM PF02605.	0.413
psaL-1	psaL-2	CYB_1499	CYB_2826	Photosystem I reaction center subunit XI; Identified by match to protein family HMM PF02605.	Photosystem I reaction center subunit XI; Identified by match to protein family HMM PF02605.	0.908
psaL-2	psaL	CYB_2826	CYB_2266	Photosystem I reaction center subunit XI; Identified by match to protein family HMM PF02605.	Photosystem II protein, PsbB/PsbC family; Identified by match to protein family HMM PF00421; match to protein family HMM PF02605.	0.413
psaL-2	psaL-1	CYB_2826	CYB_1499	Photosystem I reaction center subunit XI; Identified by match to protein family HMM PF02605.	Photosystem I reaction center subunit XI; Identified by match to protein family HMM PF02605.	0.908