(16 nodes) Mixed, incl. Transcription export complex, and Nuclear cap binding complex network (Parastagonospora nodorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SNOG_15838	Uncharacterized protein. (401 aa)
	SUB2	ATP-dependent RNA helicase SUB2; ATP-binding RNA helicase involved in transcription elongation and required for the export of mRNA out of the nucleus. SUB2 plays also a role in pre-mRNA splicing and spliceosome assembly. May be involved in rDNA and telomeric silencing, and maintenance of genome integrity (By similarity); Belongs to the DEAD box helicase family. DECD subfamily. (438 aa)
	SNOG_15203	Uncharacterized protein. (296 aa)
	SNOG_15114	WD_REPEATS_REGION domain-containing protein. (669 aa)
	SNOG_09598	Nuclear cap-binding protein subunit 2. (150 aa)
	SNOG_09202	Uncharacterized protein. (940 aa)
	SNOG_08238	Uncharacterized protein. (480 aa)
	SNOG_06923	Uncharacterized protein. (193 aa)
	SNOG_04506	C2H2-type domain-containing protein. (877 aa)
	SNOG_04315	Uncharacterized protein. (236 aa)
	SNOG_04314	Uncharacterized protein. (196 aa)
	SNOG_03897	Uncharacterized protein. (248 aa)
	SNOG_03309	Zn(2)-C6 fungal-type domain-containing protein. (1238 aa)
	SNOG_02817	Uncharacterized protein. (65 aa)
	SNOG_02555	Uncharacterized protein. (287 aa)
	SNOG_01098	SAP domain-containing protein. (288 aa)

Your Current Organism:

Parastagonospora nodorum

NCBI taxonomy Id: 321614
Other names: P. nodorum SN15, Parastagonospora nodorum SN15, Phaeosphaeria nodorum SN15

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SNOG_01098	SNOG_02555	Q0V4G6	Q0V0A9	SAP domain-containing protein.	Uncharacterized protein.	0.631
SNOG_01098	SNOG_03309	Q0V4G6	Q0UY55	SAP domain-containing protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.518
SNOG_01098	SNOG_03897	Q0V4G6	Q0UWG7	SAP domain-containing protein.	Uncharacterized protein.	0.727
SNOG_01098	SNOG_04314	Q0V4G6	Q0UVA0	SAP domain-containing protein.	Uncharacterized protein.	0.778
SNOG_01098	SNOG_04315	Q0V4G6	Q0UV99	SAP domain-containing protein.	Uncharacterized protein.	0.778
SNOG_01098	SNOG_06923	Q0V4G6	Q0UMU1	SAP domain-containing protein.	Uncharacterized protein.	0.631
SNOG_01098	SNOG_08238	Q0V4G6	Q0UJ26	SAP domain-containing protein.	Uncharacterized protein.	0.802
SNOG_01098	SNOG_09202	Q0V4G6	Q0UGB2	SAP domain-containing protein.	Uncharacterized protein.	0.496
SNOG_01098	SNOG_09598	Q0V4G6	Q0UF66	SAP domain-containing protein.	Nuclear cap-binding protein subunit 2.	0.615
SNOG_01098	SNOG_15114	Q0V4G6	Q0TZU8	SAP domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.730
SNOG_01098	SNOG_15203	Q0V4G6	Q0TZ73	SAP domain-containing protein.	Uncharacterized protein.	0.518
SNOG_01098	SNOG_15838	Q0V4G6	Q0TX28	SAP domain-containing protein.	Uncharacterized protein.	0.768
SNOG_01098	SUB2	Q0V4G6	Q0TXZ2	SAP domain-containing protein.	ATP-dependent RNA helicase SUB2; ATP-binding RNA helicase involved in transcription elongation and required for the export of mRNA out of the nucleus. SUB2 plays also a role in pre-mRNA splicing and spliceosome assembly. May be involved in rDNA and telomeric silencing, and maintenance of genome integrity (By similarity); Belongs to the DEAD box helicase family. DECD subfamily.	0.778
SNOG_02555	SNOG_01098	Q0V0A9	Q0V4G6	Uncharacterized protein.	SAP domain-containing protein.	0.631
SNOG_02555	SNOG_02817	Q0V0A9	Q0UZJ7	Uncharacterized protein.	Uncharacterized protein.	0.631
SNOG_02555	SNOG_03309	Q0V0A9	Q0UY55	Uncharacterized protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.673
SNOG_02555	SNOG_03897	Q0V0A9	Q0UWG7	Uncharacterized protein.	Uncharacterized protein.	0.731
SNOG_02555	SNOG_04314	Q0V0A9	Q0UVA0	Uncharacterized protein.	Uncharacterized protein.	0.767
SNOG_02555	SNOG_04315	Q0V0A9	Q0UV99	Uncharacterized protein.	Uncharacterized protein.	0.767
SNOG_02555	SNOG_04506	Q0V0A9	Q0UUQ8	Uncharacterized protein.	C2H2-type domain-containing protein.	0.698