(5 nodes) NMS complex network (Parastagonospora nodorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SNOG_08945	DHR10 domain-containing protein. (480 aa)
	SNOG_08769	Uncharacterized protein. (243 aa)
	SNOG_05892	Uncharacterized protein. (196 aa)
	SNOG_02537	Uncharacterized protein. (730 aa)
	SNOG_00930	Spc7 domain-containing protein. (1162 aa)

Your Current Organism:

Parastagonospora nodorum

NCBI taxonomy Id: 321614
Other names: P. nodorum SN15, Parastagonospora nodorum SN15, Phaeosphaeria nodorum SN15

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SNOG_00930	SNOG_02537	Q0V4Y4	Q0V0C7	Spc7 domain-containing protein.	Uncharacterized protein.	0.801
SNOG_00930	SNOG_05892	Q0V4Y4	Q0UQS2	Spc7 domain-containing protein.	Uncharacterized protein.	0.904
SNOG_00930	SNOG_08769	Q0V4Y4	Q0UHJ5	Spc7 domain-containing protein.	Uncharacterized protein.	0.701
SNOG_00930	SNOG_08945	Q0V4Y4	Q0UH19	Spc7 domain-containing protein.	DHR10 domain-containing protein.	0.843
SNOG_02537	SNOG_00930	Q0V0C7	Q0V4Y4	Uncharacterized protein.	Spc7 domain-containing protein.	0.801
SNOG_02537	SNOG_05892	Q0V0C7	Q0UQS2	Uncharacterized protein.	Uncharacterized protein.	0.993
SNOG_02537	SNOG_08769	Q0V0C7	Q0UHJ5	Uncharacterized protein.	Uncharacterized protein.	0.998
SNOG_02537	SNOG_08945	Q0V0C7	Q0UH19	Uncharacterized protein.	DHR10 domain-containing protein.	0.999
SNOG_05892	SNOG_00930	Q0UQS2	Q0V4Y4	Uncharacterized protein.	Spc7 domain-containing protein.	0.904
SNOG_05892	SNOG_02537	Q0UQS2	Q0V0C7	Uncharacterized protein.	Uncharacterized protein.	0.993
SNOG_05892	SNOG_08769	Q0UQS2	Q0UHJ5	Uncharacterized protein.	Uncharacterized protein.	0.996
SNOG_05892	SNOG_08945	Q0UQS2	Q0UH19	Uncharacterized protein.	DHR10 domain-containing protein.	0.978
SNOG_08769	SNOG_00930	Q0UHJ5	Q0V4Y4	Uncharacterized protein.	Spc7 domain-containing protein.	0.701
SNOG_08769	SNOG_02537	Q0UHJ5	Q0V0C7	Uncharacterized protein.	Uncharacterized protein.	0.998
SNOG_08769	SNOG_05892	Q0UHJ5	Q0UQS2	Uncharacterized protein.	Uncharacterized protein.	0.996
SNOG_08769	SNOG_08945	Q0UHJ5	Q0UH19	Uncharacterized protein.	DHR10 domain-containing protein.	0.998
SNOG_08945	SNOG_00930	Q0UH19	Q0V4Y4	DHR10 domain-containing protein.	Spc7 domain-containing protein.	0.843
SNOG_08945	SNOG_02537	Q0UH19	Q0V0C7	DHR10 domain-containing protein.	Uncharacterized protein.	0.999
SNOG_08945	SNOG_05892	Q0UH19	Q0UQS2	DHR10 domain-containing protein.	Uncharacterized protein.	0.978
SNOG_08945	SNOG_08769	Q0UH19	Q0UHJ5	DHR10 domain-containing protein.	Uncharacterized protein.	0.998