(5 nodes) Nuclear SCF ubiquitin ligase complex, and Cul3-RING ubiquitin ligase complex network (Parastagonospora nodorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SNOG_13309	CULLIN_2 domain-containing protein; Belongs to the cullin family. (775 aa)
	SNOG_12875	WD_REPEATS_REGION domain-containing protein. (639 aa)
	SNOG_09332	Uncharacterized protein; Belongs to the SKP1 family. (170 aa)
	SNOG_09105	RING-type domain-containing protein. (116 aa)
	SNOG_06220	Uncharacterized protein. (987 aa)

Your Current Organism:

Parastagonospora nodorum

NCBI taxonomy Id: 321614
Other names: P. nodorum SN15, Parastagonospora nodorum SN15, Phaeosphaeria nodorum SN15

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SNOG_06220	SNOG_09105	Q0UPU4	Q0UGK9	Uncharacterized protein.	RING-type domain-containing protein.	0.997
SNOG_06220	SNOG_09332	Q0UPU4	Q0UFY2	Uncharacterized protein.	Uncharacterized protein; Belongs to the SKP1 family.	0.999
SNOG_06220	SNOG_12875	Q0UPU4	Q0U5T9	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.911
SNOG_06220	SNOG_13309	Q0UPU4	Q0U4K5	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.985
SNOG_09105	SNOG_06220	Q0UGK9	Q0UPU4	RING-type domain-containing protein.	Uncharacterized protein.	0.997
SNOG_09105	SNOG_09332	Q0UGK9	Q0UFY2	RING-type domain-containing protein.	Uncharacterized protein; Belongs to the SKP1 family.	0.995
SNOG_09105	SNOG_12875	Q0UGK9	Q0U5T9	RING-type domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.991
SNOG_09105	SNOG_13309	Q0UGK9	Q0U4K5	RING-type domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.998
SNOG_09332	SNOG_06220	Q0UFY2	Q0UPU4	Uncharacterized protein; Belongs to the SKP1 family.	Uncharacterized protein.	0.999
SNOG_09332	SNOG_09105	Q0UFY2	Q0UGK9	Uncharacterized protein; Belongs to the SKP1 family.	RING-type domain-containing protein.	0.995
SNOG_09332	SNOG_12875	Q0UFY2	Q0U5T9	Uncharacterized protein; Belongs to the SKP1 family.	WD_REPEATS_REGION domain-containing protein.	0.954
SNOG_09332	SNOG_13309	Q0UFY2	Q0U4K5	Uncharacterized protein; Belongs to the SKP1 family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.998
SNOG_12875	SNOG_06220	Q0U5T9	Q0UPU4	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.911
SNOG_12875	SNOG_09105	Q0U5T9	Q0UGK9	WD_REPEATS_REGION domain-containing protein.	RING-type domain-containing protein.	0.991
SNOG_12875	SNOG_09332	Q0U5T9	Q0UFY2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the SKP1 family.	0.954
SNOG_12875	SNOG_13309	Q0U5T9	Q0U4K5	WD_REPEATS_REGION domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.964
SNOG_13309	SNOG_06220	Q0U4K5	Q0UPU4	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.985
SNOG_13309	SNOG_09105	Q0U4K5	Q0UGK9	CULLIN_2 domain-containing protein; Belongs to the cullin family.	RING-type domain-containing protein.	0.998
SNOG_13309	SNOG_09332	Q0U4K5	Q0UFY2	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein; Belongs to the SKP1 family.	0.998
SNOG_13309	SNOG_12875	Q0U4K5	Q0U5T9	CULLIN_2 domain-containing protein; Belongs to the cullin family.	WD_REPEATS_REGION domain-containing protein.	0.964