6 items (Parastagonospora nodorum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SNOG_12996	Uncharacterized protein. (293 aa)
	SNOG_12196	Uncharacterized protein. (671 aa)
	SNOG_05781	Uncharacterized protein. (298 aa)
	SNOG_01737	Protein kinase domain-containing protein. (450 aa)
	SNOG_01505	Uncharacterized protein. (482 aa)
	SNOG_01321	Uncharacterized protein. (258 aa)

Your Current Organism:

Parastagonospora nodorum

NCBI taxonomy Id: 321614
Other names: P. nodorum SN15, Parastagonospora nodorum SN15, Phaeosphaeria nodorum SN15

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SNOG_01321	SNOG_05781	Q0V3U3	Q0UR33	Uncharacterized protein.	Uncharacterized protein.	0.675
SNOG_01321	SNOG_12196	Q0V3U3	Q0U7R8	Uncharacterized protein.	Uncharacterized protein.	0.641
SNOG_01505	SNOG_05781	Q0V3A9	Q0UR33	Uncharacterized protein.	Uncharacterized protein.	0.675
SNOG_01505	SNOG_12196	Q0V3A9	Q0U7R8	Uncharacterized protein.	Uncharacterized protein.	0.641
SNOG_05781	SNOG_01321	Q0UR33	Q0V3U3	Uncharacterized protein.	Uncharacterized protein.	0.675
SNOG_05781	SNOG_01505	Q0UR33	Q0V3A9	Uncharacterized protein.	Uncharacterized protein.	0.675
SNOG_12196	SNOG_01321	Q0U7R8	Q0V3U3	Uncharacterized protein.	Uncharacterized protein.	0.641
SNOG_12196	SNOG_01505	Q0U7R8	Q0V3A9	Uncharacterized protein.	Uncharacterized protein.	0.641