(27 nodes) Mixed, incl. Outer kinetochore, and Gamma-tubulin complex network (Parastagonospora nodorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SNOG_14989	Uncharacterized protein. (109 aa)
	SNOG_13374	Uncharacterized protein. (621 aa)
	SNOG_13330	Uncharacterized protein. (1143 aa)
	SNOG_13269	Uncharacterized protein. (394 aa)
	SNOG_12859	Tafazzin family protein; Belongs to the taffazin family. (296 aa)
	SNOG_12041	Uncharacterized protein. (258 aa)
	SNOG_11831	Peroxin/Ferlin domain-containing protein. (343 aa)
	SNOG_11410	Uncharacterized protein. (302 aa)
	SNOG_10856	Spindle pole body component. (872 aa)
	SNOG_10731	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome. (459 aa)
	SNOG_08980	Spindle pole body component. (784 aa)
	SNOG_08758	Uncharacterized protein. (82 aa)
	SNOG_08632	Uncharacterized protein. (147 aa)
	SNOG_07967	Uncharacterized protein. (252 aa)
	SNOG_07404	Uncharacterized protein. (93 aa)
	SNOG_06851	Uncharacterized protein. (1292 aa)
	SNOG_05985	Spindle pole body component. (795 aa)
	SNOG_05467	Spindle pole body component. (916 aa)
	SNOG_05407	Uncharacterized protein. (762 aa)
	SNOG_05311	Uncharacterized protein. (138 aa)
	SNOG_05121	Uncharacterized protein. (596 aa)
	SNOG_03200	Uncharacterized protein. (752 aa)
	SNOG_02099	Uncharacterized protein. (65 aa)
	SNOG_01704	Uncharacterized protein. (443 aa)
	SNOG_01663	Spindle pole body component. (922 aa)
	SNOG_01061	Uncharacterized protein. (700 aa)
	SNOG_00320	Uncharacterized protein. (176 aa)

Your Current Organism:

Parastagonospora nodorum

NCBI taxonomy Id: 321614
Other names: P. nodorum SN15, Parastagonospora nodorum SN15, Phaeosphaeria nodorum SN15

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SNOG_00320	SNOG_01704	Q0V6P4	Q0V2R0	Uncharacterized protein.	Uncharacterized protein.	0.795
SNOG_00320	SNOG_02099	Q0V6P4	Q0V1L5	Uncharacterized protein.	Uncharacterized protein.	0.921
SNOG_00320	SNOG_05311	Q0V6P4	Q0USF3	Uncharacterized protein.	Uncharacterized protein.	0.981
SNOG_00320	SNOG_05467	Q0V6P4	Q0URZ7	Uncharacterized protein.	Spindle pole body component.	0.707
SNOG_00320	SNOG_05985	Q0V6P4	Q0UQH9	Uncharacterized protein.	Spindle pole body component.	0.817
SNOG_00320	SNOG_07404	Q0V6P4	Q0ULG0	Uncharacterized protein.	Uncharacterized protein.	0.566
SNOG_00320	SNOG_07967	Q0V6P4	Q0UJU7	Uncharacterized protein.	Uncharacterized protein.	0.897
SNOG_00320	SNOG_08632	Q0V6P4	Q0UHY2	Uncharacterized protein.	Uncharacterized protein.	0.540
SNOG_00320	SNOG_12041	Q0V6P4	Q0U873	Uncharacterized protein.	Uncharacterized protein.	0.978
SNOG_00320	SNOG_13269	Q0V6P4	Q0U4P5	Uncharacterized protein.	Uncharacterized protein.	0.881
SNOG_00320	SNOG_14989	Q0V6P4	Q0TZI1	Uncharacterized protein.	Uncharacterized protein.	0.969
SNOG_01061	SNOG_01663	Q0V4K3	Q0V2V1	Uncharacterized protein.	Spindle pole body component.	0.766
SNOG_01061	SNOG_05467	Q0V4K3	Q0URZ7	Uncharacterized protein.	Spindle pole body component.	0.741
SNOG_01061	SNOG_05985	Q0V4K3	Q0UQH9	Uncharacterized protein.	Spindle pole body component.	0.741
SNOG_01061	SNOG_08980	Q0V4K3	Q0UGY4	Uncharacterized protein.	Spindle pole body component.	0.879
SNOG_01061	SNOG_10731	Q0V4K3	Q0UBY3	Uncharacterized protein.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.908
SNOG_01061	SNOG_10856	Q0V4K3	Q0UBK8	Uncharacterized protein.	Spindle pole body component.	0.886
SNOG_01061	SNOG_13269	Q0V4K3	Q0U4P5	Uncharacterized protein.	Uncharacterized protein.	0.741
SNOG_01663	SNOG_01061	Q0V2V1	Q0V4K3	Spindle pole body component.	Uncharacterized protein.	0.766
SNOG_01663	SNOG_03200	Q0V2V1	Q0UYG4	Spindle pole body component.	Uncharacterized protein.	0.431