(27 nodes) Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay network (Parastagonospora nodorum)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SNOG_08245	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (2305 aa)
	SNOG_08240	Uncharacterized protein. (1288 aa)
	SNOG_07432	RNase_PH domain-containing protein. (368 aa)
	SNOG_07057	RNase_PH domain-containing protein. (356 aa)
	SNOG_06711	RRM domain-containing protein. (456 aa)
	SNOG_05928	Uncharacterized protein. (1195 aa)
	SNOG_05148	WD_REPEATS_REGION domain-containing protein. (329 aa)
	SNOG_03162	Mago-bind domain-containing protein. (199 aa)
	SNOG_00754	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (257 aa)
	SNOG_00739	Uncharacterized protein. (522 aa)
	SNOG_00485	RNase_PH domain-containing protein. (251 aa)
	SNOG_16005	Uncharacterized protein. (41 aa)
	SNOG_15804	TPR_REGION domain-containing protein. (287 aa)
	SNOG_15803	Uncharacterized protein. (1139 aa)
	SNOG_13798	Uncharacterized protein. (292 aa)
	SNOG_13011	Uncharacterized protein. (218 aa)
	SNOG_11480	Uncharacterized protein. (439 aa)
	SNOG_10969	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins. (1439 aa)
	SNOG_10712	Uncharacterized protein. (1078 aa)
	SNOG_10456	Uncharacterized protein. (506 aa)
	SNOG_10343	RNase_PH domain-containing protein. (249 aa)
	SNOG_10297	Nudix hydrolase domain-containing protein. (1026 aa)
	SNOG_09392	Uncharacterized protein. (293 aa)
	SNOG_09202	Uncharacterized protein. (940 aa)
	SNOG_09157	RRM domain-containing protein. (660 aa)
	SNOG_08402	Uncharacterized protein. (321 aa)
	SNOG_08367	Uncharacterized protein; Belongs to the DEAD box helicase family. (668 aa)

Your Current Organism:

Parastagonospora nodorum

NCBI taxonomy Id: 321614
Other names: P. nodorum SN15, Parastagonospora nodorum SN15, Phaeosphaeria nodorum SN15

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SNOG_00485	SNOG_05148	Q0V679	Q0USW6	RNase_PH domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.813
SNOG_00485	SNOG_07057	Q0V679	Q0UMF7	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.999
SNOG_00485	SNOG_07432	Q0V679	Q0ULD2	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.999
SNOG_00485	SNOG_08240	Q0V679	Q0UJ24	RNase_PH domain-containing protein.	Uncharacterized protein.	0.919
SNOG_00485	SNOG_08402	Q0V679	Q0UIL2	RNase_PH domain-containing protein.	Uncharacterized protein.	0.498
SNOG_00485	SNOG_09392	Q0V679	Q0UFS2	RNase_PH domain-containing protein.	Uncharacterized protein.	0.657
SNOG_00485	SNOG_10297	Q0V679	Q0UD67	RNase_PH domain-containing protein.	Nudix hydrolase domain-containing protein.	0.510
SNOG_00485	SNOG_10343	Q0V679	Q0UD21	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.999
SNOG_00485	SNOG_10969	Q0V679	Q0UB95	RNase_PH domain-containing protein.	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.	0.832
SNOG_00485	SNOG_13798	Q0V679	Q0U366	RNase_PH domain-containing protein.	Uncharacterized protein.	0.999
SNOG_00485	SNOG_15803	Q0V679	Q0TXP6	RNase_PH domain-containing protein.	Uncharacterized protein.	0.755
SNOG_00485	SNOG_15804	Q0V679	Q0TXP5	RNase_PH domain-containing protein.	TPR_REGION domain-containing protein.	0.755
SNOG_00754	SNOG_08245	Q0V5G0	Q0UJ18	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.503
SNOG_00754	SNOG_09202	Q0V5G0	Q0UGB2	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Uncharacterized protein.	0.880
SNOG_00754	SNOG_10297	Q0V5G0	Q0UD67	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Nudix hydrolase domain-containing protein.	0.543
SNOG_00754	SNOG_10456	Q0V5G0	Q0UCQ8	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Uncharacterized protein.	0.662
SNOG_00754	SNOG_10712	Q0V5G0	Q0UC02	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Uncharacterized protein.	0.589
SNOG_00754	SNOG_10969	Q0V5G0	Q0UB95	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.	0.696
SNOG_03162	SNOG_05928	Q0UYK2	Q0UQN6	Mago-bind domain-containing protein.	Uncharacterized protein.	0.713
SNOG_03162	SNOG_06711	Q0UYK2	Q0UNF3	Mago-bind domain-containing protein.	RRM domain-containing protein.	0.457