(6 nodes) Snf7 family network (Parastagonospora nodorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SNOG_10787	Uncharacterized protein. (221 aa)
	SNOG_14968	Uncharacterized protein. (228 aa)
	SNOG_06522	Uncharacterized protein. (172 aa)
	SNOG_05489	Uncharacterized protein. (225 aa)
	SNOG_08650	Uncharacterized protein. (535 aa)
	SNOG_08784	Uncharacterized protein. (205 aa)

Your Current Organism:

Parastagonospora nodorum

NCBI taxonomy Id: 321614
Other names: P. nodorum SN15, Parastagonospora nodorum SN15, Phaeosphaeria nodorum SN15

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SNOG_05489	SNOG_06522	Q0URX5	Q0UNZ2	Uncharacterized protein.	Uncharacterized protein.	0.983
SNOG_05489	SNOG_08650	Q0URX5	Q0UHW4	Uncharacterized protein.	Uncharacterized protein.	0.991
SNOG_05489	SNOG_08784	Q0URX5	Q0UHI0	Uncharacterized protein.	Uncharacterized protein.	0.998
SNOG_05489	SNOG_10787	Q0URX5	Q0UBS7	Uncharacterized protein.	Uncharacterized protein.	0.999
SNOG_05489	SNOG_14968	Q0URX5	Q0TZF6	Uncharacterized protein.	Uncharacterized protein.	0.999
SNOG_06522	SNOG_05489	Q0UNZ2	Q0URX5	Uncharacterized protein.	Uncharacterized protein.	0.983
SNOG_06522	SNOG_08650	Q0UNZ2	Q0UHW4	Uncharacterized protein.	Uncharacterized protein.	0.797
SNOG_06522	SNOG_08784	Q0UNZ2	Q0UHI0	Uncharacterized protein.	Uncharacterized protein.	0.873
SNOG_06522	SNOG_10787	Q0UNZ2	Q0UBS7	Uncharacterized protein.	Uncharacterized protein.	0.971
SNOG_06522	SNOG_14968	Q0UNZ2	Q0TZF6	Uncharacterized protein.	Uncharacterized protein.	0.941
SNOG_08650	SNOG_05489	Q0UHW4	Q0URX5	Uncharacterized protein.	Uncharacterized protein.	0.991
SNOG_08650	SNOG_06522	Q0UHW4	Q0UNZ2	Uncharacterized protein.	Uncharacterized protein.	0.797
SNOG_08650	SNOG_08784	Q0UHW4	Q0UHI0	Uncharacterized protein.	Uncharacterized protein.	0.990
SNOG_08650	SNOG_10787	Q0UHW4	Q0UBS7	Uncharacterized protein.	Uncharacterized protein.	0.946
SNOG_08650	SNOG_14968	Q0UHW4	Q0TZF6	Uncharacterized protein.	Uncharacterized protein.	0.991
SNOG_08784	SNOG_05489	Q0UHI0	Q0URX5	Uncharacterized protein.	Uncharacterized protein.	0.998
SNOG_08784	SNOG_06522	Q0UHI0	Q0UNZ2	Uncharacterized protein.	Uncharacterized protein.	0.873
SNOG_08784	SNOG_08650	Q0UHI0	Q0UHW4	Uncharacterized protein.	Uncharacterized protein.	0.990
SNOG_08784	SNOG_10787	Q0UHI0	Q0UBS7	Uncharacterized protein.	Uncharacterized protein.	0.996
SNOG_08784	SNOG_14968	Q0UHI0	Q0TZF6	Uncharacterized protein.	Uncharacterized protein.	0.995