STRINGSTRING
SNOG_06355 SNOG_06355 SNOG_14990 SNOG_14990 SNOG_13933 SNOG_13933 SNOG_13705 SNOG_13705 PIM1 PIM1 SNOG_09957 SNOG_09957 SNOG_09889 SNOG_09889 SNOG_08751 SNOG_08751 SNOG_08214 SNOG_08214 SNOG_07966 SNOG_07966 SNOG_06850 SNOG_06850 SNOG_06058 SNOG_06058 SNOG_06038 SNOG_06038 SNOG_04832 SNOG_04832 SNOG_04746 SNOG_04746 SNOG_04311 SNOG_04311 SNOG_03909 SNOG_03909 SNOG_02413 SNOG_02413 SNOG_00672 SNOG_00672 MEF1 MEF1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SNOG_06355DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks. (1705 aa)
SNOG_14990S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (416 aa)
SNOG_13933Lon protease homolog 2, peroxisomal; ATP-dependent serine protease that mediates the selective degradation of misfolded and unassembled polypeptides in the peroxisomal matrix. Necessary for type 2 peroxisome targeting signal (PTS2)-containing protein processing and facilitates peroxisome matrix protein import; Belongs to the peptidase S16 family. ECO:0000256|PROSITE-. (929 aa)
SNOG_13705Tr-type G domain-containing protein. (746 aa)
PIM1Lon protease homolog, mitochondrial; ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial DNA in a site-specific manner; Belongs to the peptidase S16 family. (1114 aa)
SNOG_09957Tr-type G domain-containing protein. (1010 aa)
SNOG_09889Uncharacterized protein. (758 aa)
SNOG_08751DNA_mis_repair domain-containing protein. (751 aa)
SNOG_08214Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (193 aa)
SNOG_07966Uncharacterized protein. (515 aa)
SNOG_06850Phosphomevalonate kinase; Belongs to the GHMP kinase family. Mevalonate kinase subfamily. (459 aa)
SNOG_06058Uncharacterized protein. (1051 aa)
SNOG_06038Tr-type G domain-containing protein. (843 aa)
SNOG_04832Diphosphomevalonate decarboxylase; Belongs to the diphosphomevalonate decarboxylase family. (398 aa)
SNOG_04746Tr-type G domain-containing protein. (988 aa)
SNOG_04311DNA_mis_repair domain-containing protein. (1030 aa)
SNOG_03909GHMP_kinases_C domain-containing protein. (380 aa)
SNOG_02413Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (329 aa)
SNOG_00672S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (261 aa)
MEF1Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. (654 aa)
Your Current Organism:
Parastagonospora nodorum
NCBI taxonomy Id: 321614
Other names: P. nodorum SN15, Parastagonospora nodorum SN15, Phaeosphaeria nodorum SN15
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