(40 nodes) ABC transporter-like, conserved site network (Parastagonospora nodorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SNOG_00897	ABC transporter domain-containing protein. (1087 aa)
	SNOG_01792	Uncharacterized protein. (1611 aa)
	SNOG_02135	Uncharacterized protein. (1087 aa)
	SNOG_11061	Uncharacterized protein. (603 aa)
	SNOG_11396	Uncharacterized protein. (873 aa)
	SNOG_15094	Uncharacterized protein. (1295 aa)
	SNOG_15381	Uncharacterized protein. (618 aa)
	SNOG_15856	Uncharacterized protein. (680 aa)
	SNOG_15823	Uncharacterized protein. (715 aa)
	SNOG_12392	Uncharacterized protein. (710 aa)
	SNOG_03560	Uncharacterized protein; Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily. (1475 aa)
	SNOG_03688	Uncharacterized protein. (1440 aa)
	SNOG_05520	Uncharacterized protein. (625 aa)
	SNOG_05636	Uncharacterized protein. (1242 aa)
	SNOG_05861	Uncharacterized protein. (1064 aa)
	SNOG_12632	Uncharacterized protein; Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily. (1549 aa)
	SNOG_13131	Uncharacterized protein. (699 aa)
	SNOG_13588	Uncharacterized protein. (1125 aa)
	SNOG_14245	Uncharacterized protein; Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily. (1407 aa)
	SNOG_14100	Uncharacterized protein. (1283 aa)
	SNOG_10948	Uncharacterized protein; Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily. (1463 aa)
	SNOG_07726	Uncharacterized protein. (1113 aa)
	SNOG_09087	Uncharacterized protein. (1489 aa)
	SNOG_09117	ABC transporter domain-containing protein. (558 aa)
	SNOG_09278	Uncharacterized protein. (1517 aa)
	SNOG_09336	Uncharacterized protein. (1741 aa)
	SNOG_14365	Uncharacterized protein. (1212 aa)
	SNOG_14836	Uncharacterized protein. (1469 aa)
	SNOG_07116-2	Uncharacterized protein. (726 aa)
	SNOG_06859	Uncharacterized protein. (561 aa)
	SNOG_06289	Uncharacterized protein; Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily. (1627 aa)
	SNOG_06166	Uncharacterized protein; Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily. (1596 aa)
	SNOG_06002	Uncharacterized protein. (1184 aa)
	SNOG_05968	Uncharacterized protein. (1274 aa)
	SNOG_02689	ABC transporter domain-containing protein. (1130 aa)
	SNOG_02946	Uncharacterized protein. (910 aa)
	SNOG_03422	Uncharacterized protein. (1621 aa)
	SNOG_00511	Uncharacterized protein. (961 aa)
	SNOG_00742	Uncharacterized protein. (1457 aa)
	SNOG_00757	Uncharacterized protein. (1113 aa)

Your Current Organism:

Parastagonospora nodorum

NCBI taxonomy Id: 321614
Other names: P. nodorum SN15, Parastagonospora nodorum SN15, Phaeosphaeria nodorum SN15

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SNOG_00511	SNOG_05861	Q0V653	Q0UQV3	Uncharacterized protein.	Uncharacterized protein.	0.404
SNOG_00897	SNOG_05861	Q0V517	Q0UQV3	ABC transporter domain-containing protein.	Uncharacterized protein.	0.470
SNOG_00897	SNOG_07726	Q0V517	Q0UKI8	ABC transporter domain-containing protein.	Uncharacterized protein.	0.566
SNOG_01792	SNOG_03422	Q0V2H2	Q0UXU2	Uncharacterized protein.	Uncharacterized protein.	0.907
SNOG_02946	SNOG_06859	Q0UZ67	Q0UN05	Uncharacterized protein.	Uncharacterized protein.	0.634
SNOG_02946	SNOG_15856	Q0UZ67	Q0TX40	Uncharacterized protein.	Uncharacterized protein.	0.735
SNOG_03422	SNOG_01792	Q0UXU2	Q0V2H2	Uncharacterized protein.	Uncharacterized protein.	0.907
SNOG_05520	SNOG_05861	Q0URU4	Q0UQV3	Uncharacterized protein.	Uncharacterized protein.	0.404
SNOG_05861	SNOG_00511	Q0UQV3	Q0V653	Uncharacterized protein.	Uncharacterized protein.	0.404
SNOG_05861	SNOG_00897	Q0UQV3	Q0V517	Uncharacterized protein.	ABC transporter domain-containing protein.	0.470
SNOG_05861	SNOG_05520	Q0UQV3	Q0URU4	Uncharacterized protein.	Uncharacterized protein.	0.404
SNOG_05861	SNOG_06859	Q0UQV3	Q0UN05	Uncharacterized protein.	Uncharacterized protein.	0.848
SNOG_05861	SNOG_07116-2	Q0UQV3	Q0UM98	Uncharacterized protein.	Uncharacterized protein.	0.678
SNOG_05861	SNOG_07726	Q0UQV3	Q0UKI8	Uncharacterized protein.	Uncharacterized protein.	0.997
SNOG_05861	SNOG_09117	Q0UQV3	Q0UGJ7	Uncharacterized protein.	ABC transporter domain-containing protein.	0.470
SNOG_05861	SNOG_11396	Q0UQV3	Q0UA18	Uncharacterized protein.	Uncharacterized protein.	0.444
SNOG_05861	SNOG_12392	Q0UQV3	Q0U772	Uncharacterized protein.	Uncharacterized protein.	0.404
SNOG_05861	SNOG_13131	Q0UQV3	Q0U533	Uncharacterized protein.	Uncharacterized protein.	0.682
SNOG_05861	SNOG_15381	Q0UQV3	Q0TYW2	Uncharacterized protein.	Uncharacterized protein.	0.776
SNOG_05861	SNOG_15856	Q0UQV3	Q0TX40	Uncharacterized protein.	Uncharacterized protein.	0.636