(17 nodes) Mixed, incl. DNA modification, and DNA2/NAM7 helicase-like, C-terminal network (Halarsenatibacter silvermanii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SDL33568.1	Wobble nucleotide-excising tRNase. (780 aa)
	SDL33595.1	TaqI-like C-terminal specificity domain-containing protein. (487 aa)
	SDL37842.1	Predicted component of the ribosome quality control (RQC) complex, YloA/Tae2 family, contains fibronectin-binding (FbpA) and DUF814 domains. (589 aa)
	SDL68958.1	Hypothetical protein. (139 aa)
	SDL68718.1	Hypothetical protein. (56 aa)
	SDL68755.1	Type I restriction enzyme M protein. (497 aa)
	SDL68795.1	Type I restriction enzyme, S subunit. (439 aa)
	SDL68833.1	Type I restriction enzyme, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification. (1018 aa)
	SDL68871.1	Hypothetical protein. (243 aa)
	SDL68914.1	Hypothetical protein. (356 aa)
	SDL84721.1	DNA helicase, putative. (749 aa)
	SDM28897.1	Protein of unknown function. (427 aa)
	SDM50918.1	Hypothetical protein. (207 aa)
	SDM50968.1	Transcriptional pleiotropic regulator of transition state genes. (49 aa)
	SDM51007.1	Methyltransferase domain-containing protein. (1132 aa)
	SDM55079.1	Protein of unknown function. (552 aa)
	SDM55417.1	Methyltransferase domain-containing protein. (655 aa)

Your Current Organism:

Halarsenatibacter silvermanii

NCBI taxonomy Id: 321763
Other names: DSM 21684, H. silvermanii, Halanaerobiaceae bacterium SLAS-1, Halarsenatibacter silvermanii Switzer Blum et al. 2010, strain SLAS-1

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDL33568.1	SDL33595.1	SAMN04488692_103161	SAMN04488692_103162	Wobble nucleotide-excising tRNase.	TaqI-like C-terminal specificity domain-containing protein.	0.793
SDL33595.1	SDL33568.1	SAMN04488692_103162	SAMN04488692_103161	TaqI-like C-terminal specificity domain-containing protein.	Wobble nucleotide-excising tRNase.	0.793
SDL33595.1	SDL37842.1	SAMN04488692_103162	SAMN04488692_10418	TaqI-like C-terminal specificity domain-containing protein.	Predicted component of the ribosome quality control (RQC) complex, YloA/Tae2 family, contains fibronectin-binding (FbpA) and DUF814 domains.	0.883
SDL33595.1	SDL68755.1	SAMN04488692_103162	SAMN04488692_10795	TaqI-like C-terminal specificity domain-containing protein.	Type I restriction enzyme M protein.	0.409
SDL33595.1	SDL68795.1	SAMN04488692_103162	SAMN04488692_10796	TaqI-like C-terminal specificity domain-containing protein.	Type I restriction enzyme, S subunit.	0.400
SDL33595.1	SDL84721.1	SAMN04488692_103162	SAMN04488692_11045	TaqI-like C-terminal specificity domain-containing protein.	DNA helicase, putative.	0.752
SDL33595.1	SDM28897.1	SAMN04488692_103162	SAMN04488692_1252	TaqI-like C-terminal specificity domain-containing protein.	Protein of unknown function.	0.752
SDL33595.1	SDM51007.1	SAMN04488692_103162	SAMN04488692_1473	TaqI-like C-terminal specificity domain-containing protein.	Methyltransferase domain-containing protein.	0.512
SDL33595.1	SDM55079.1	SAMN04488692_103162	SAMN04488692_1591	TaqI-like C-terminal specificity domain-containing protein.	Protein of unknown function.	0.752
SDL33595.1	SDM55417.1	SAMN04488692_103162	SAMN04488692_1611	TaqI-like C-terminal specificity domain-containing protein.	Methyltransferase domain-containing protein.	0.985
SDL37842.1	SDL33595.1	SAMN04488692_10418	SAMN04488692_103162	Predicted component of the ribosome quality control (RQC) complex, YloA/Tae2 family, contains fibronectin-binding (FbpA) and DUF814 domains.	TaqI-like C-terminal specificity domain-containing protein.	0.883
SDL37842.1	SDL84721.1	SAMN04488692_10418	SAMN04488692_11045	Predicted component of the ribosome quality control (RQC) complex, YloA/Tae2 family, contains fibronectin-binding (FbpA) and DUF814 domains.	DNA helicase, putative.	0.774
SDL37842.1	SDM28897.1	SAMN04488692_10418	SAMN04488692_1252	Predicted component of the ribosome quality control (RQC) complex, YloA/Tae2 family, contains fibronectin-binding (FbpA) and DUF814 domains.	Protein of unknown function.	0.697
SDL37842.1	SDM55079.1	SAMN04488692_10418	SAMN04488692_1591	Predicted component of the ribosome quality control (RQC) complex, YloA/Tae2 family, contains fibronectin-binding (FbpA) and DUF814 domains.	Protein of unknown function.	0.697
SDL68718.1	SDL68755.1	SAMN04488692_10794	SAMN04488692_10795	Hypothetical protein.	Type I restriction enzyme M protein.	0.543
SDL68718.1	SDL68795.1	SAMN04488692_10794	SAMN04488692_10796	Hypothetical protein.	Type I restriction enzyme, S subunit.	0.543
SDL68718.1	SDL68833.1	SAMN04488692_10794	SAMN04488692_10797	Hypothetical protein.	Type I restriction enzyme, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	0.543
SDL68718.1	SDL68871.1	SAMN04488692_10794	SAMN04488692_10798	Hypothetical protein.	Hypothetical protein.	0.447
SDL68755.1	SDL33595.1	SAMN04488692_10795	SAMN04488692_103162	Type I restriction enzyme M protein.	TaqI-like C-terminal specificity domain-containing protein.	0.409
SDL68755.1	SDL68718.1	SAMN04488692_10795	SAMN04488692_10794	Type I restriction enzyme M protein.	Hypothetical protein.	0.543

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