(110 nodes) Cytosolic small ribosomal subunit network (Physcomitrella patens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PHYPA_030744	Ribosomal_S3_C domain-containing protein. (111 aa)
	PHYPA_031067	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (149 aa)
	PHYPA_030157	Uncharacterized protein. (125 aa)
	PHYPA_028674	Ribosomal_S5_C domain-containing protein. (152 aa)
	PHYPA_028794	Uncharacterized protein. (96 aa)
	PHYPA_028864	Uncharacterized protein. (112 aa)
	PHYPA_027955	Ribosomal_S10 domain-containing protein. (109 aa)
	PHYPA_028256	Uncharacterized protein. (314 aa)
	PHYPA_025806	Uncharacterized protein. (141 aa)
	PHYPA_024918	Ribosomal_S10 domain-containing protein. (193 aa)
	PHYPA_022909	Uncharacterized protein. (103 aa)
	PHYPA_021574	S4 RNA-binding domain-containing protein. (88 aa)
	PHYPA_021618	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (146 aa)
	PHYPA_021641	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (170 aa)
	PHYPA_022235	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (295 aa)
	PHYPA_021080	Ribosomal_S4 domain-containing protein. (139 aa)
	PHYPA_021199	S4 RNA-binding domain-containing protein. (306 aa)
	PHYPA_020033	Ribosomal_S10 domain-containing protein. (121 aa)
	PHYPA_020234	Uncharacterized protein. (158 aa)
	PHYPA_018145	Ribosomal_S10 domain-containing protein. (121 aa)
	PHYPA_018300	Uncharacterized protein. (88 aa)
	PHYPA_018501	Uncharacterized protein. (208 aa)
	PHYPA_018576	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (310 aa)
	PHYPA_015744	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (136 aa)
	PHYPA_016018	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (150 aa)
	PHYPA_016105	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (135 aa)
	PHYPA_015137	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (254 aa)
	PHYPA_015354	Uncharacterized protein. (644 aa)
	PHYPA_013025	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family. (220 aa)
	PHYPA_008700	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (126 aa)
	PHYPA_009546	Uncharacterized protein. (82 aa)
	PHYPA_001312	Uncharacterized protein. (65 aa)
	PHYPA_007751	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (119 aa)
	PHYPA_005708	Uncharacterized protein. (135 aa)
	PHYPA_006250	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (234 aa)
	PHYPA_006329	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (135 aa)
	PHYPA_004439	Uncharacterized protein. (132 aa)
	PHYPA_004952	Ubiquitin-like domain-containing protein. (128 aa)
	PHYPA_002332	Uncharacterized protein. (78 aa)
	PHYPA_002467	Uncharacterized protein. (173 aa)
	PHYPA_002699	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (107 aa)
	PHYPA_002896	S10_plectin domain-containing protein. (175 aa)
	PHYPA_003175	Uncharacterized protein. (146 aa)
	PHYPA_003340	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (84 aa)
	PHYPA_003646	Uncharacterized protein. (144 aa)
	PHYPA_000027	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (58 aa)
	PHYPA_000259	Uncharacterized protein; Belongs to the universal ribosomal protein uS15 family. (72 aa)
	PHYPA_000971	Ribosomal_S10 domain-containing protein. (121 aa)
	PHYPA_001102	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (304 aa)
	PHYPA_003519	Predicted protein; Belongs to the universal ribosomal protein uS8 family. (130 aa)
	PHYPA_010654	Predicted protein. (144 aa)
	PHYPA_013583	Uncharacterized protein. (56 aa)
	PHYPA_027778	Predicted protein; Belongs to the universal ribosomal protein uS5 family. (280 aa)
	PHYPA_011664	Predicted protein; Belongs to the universal ribosomal protein uS7 family. (196 aa)
	PHYPA_027859	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (81 aa)
	PHYPA_004865	Predicted protein; Belongs to the universal ribosomal protein uS4 family. (198 aa)
	PHYPA_009101	Predicted protein; Belongs to the universal ribosomal protein uS4 family. (198 aa)
	PHYPA_010922	Predicted protein; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	PHYPA_022606	Predicted protein; Belongs to the universal ribosomal protein uS9 family. (144 aa)
	PHYPA_028534	Predicted protein. (182 aa)
	PHYPA_001165	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (108 aa)
	PHYPA_001271	Predicted protein; Belongs to the universal ribosomal protein uS17 family. (160 aa)
	PHYPA_001313	Predicted protein. (142 aa)
	PHYPA_010917	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (62 aa)
	PHYPA_012591	Predicted protein; Belongs to the universal ribosomal protein uS3 family. (231 aa)
	PHYPA_007282	Predicted protein; Belongs to the universal ribosomal protein uS3 family. (230 aa)
	PHYPA_018734	Predicted protein. (65 aa)
	PHYPA_018737	Predicted protein. (142 aa)
	PHYPA_018472	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (108 aa)
	PHYPA_016099	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (135 aa)
	PHYPA_000803	Predicted protein. (180 aa)
	PHYPA_000185	Predicted protein. (130 aa)
	PHYPA_016439	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (216 aa)
	PHYPA_004864	Predicted protein; Belongs to the universal ribosomal protein uS19 family. (150 aa)
	PHYPA_018578	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (292 aa)
	PHYPA_031132	Predicted protein; Belongs to the universal ribosomal protein uS17 family. (160 aa)
	PHYPA_030773	Predicted protein; Belongs to the universal ribosomal protein uS4 family. (198 aa)
	PHYPA_030831	Predicted protein. (144 aa)
	PHYPA_014862	Predicted protein; Belongs to the universal ribosomal protein uS8 family. (130 aa)
	PHYPA_003138	Predicted protein; Belongs to the universal ribosomal protein uS12 family. (142 aa)
	PHYPA_014201	Predicted protein. (176 aa)
	PHYPA_016019	Predicted protein; Belongs to the universal ribosomal protein uS4 family. (198 aa)
	PHYPA_027308	40S ribosomal protein S27. (86 aa)
	PHYPA_027307	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (263 aa)
	PHYPA_013243	Predicted protein. (180 aa)
	PHYPA_022117	Predicted protein. (142 aa)
	PHYPA_011937	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (195 aa)
	PHYPA_024541	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (195 aa)
	PHYPA_026586	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (216 aa)
	PHYPA_012266	Predicted protein; Belongs to the universal ribosomal protein uS9 family. (143 aa)
	PHYPA_018577	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (292 aa)
	PHYPA_017602	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (216 aa)
	PHYPA_017589	Predicted protein; Belongs to the universal ribosomal protein uS4 family. (197 aa)
	PHYPA_017588	Predicted protein; Belongs to the universal ribosomal protein uS19 family. (150 aa)
	PHYPA_027393	Predicted protein; Belongs to the universal ribosomal protein uS9 family. (144 aa)
	PHYPA_006057	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (216 aa)
	PHYPA_020233	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (247 aa)
	PHYPA_017879	Predicted protein. (177 aa)
	PHYPA_020078	Predicted protein; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	PHYPA_028683	Predicted protein; Belongs to the universal ribosomal protein uS5 family. (280 aa)
	PHYPA_024432	Predicted protein; Belongs to the universal ribosomal protein uS9 family. (144 aa)
	PHYPA_023782	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (216 aa)
	PHYPA_016731	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (81 aa)
	PHYPA_009992	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (249 aa)
	PHYPA_029228	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (195 aa)
	PHYPA_020708	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (126 aa)
	PHYPA_025318	Predicted protein; Belongs to the universal ribosomal protein uS5 family. (280 aa)
	PHYPA_011191	Predicted protein; Belongs to the universal ribosomal protein uS5 family. (280 aa)
	PHYPA_028008	Predicted protein. (178 aa)
	PHYPA_029547	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (263 aa)

Your Current Organism:

Physcomitrella patens

NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PHYPA_000027	PHYPA_000185	A0A2K1L6G7	A9S3C9	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Predicted protein.	0.960
PHYPA_000027	PHYPA_000259	A0A2K1L6G7	A0A2K1L719	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS15 family.	0.993
PHYPA_000027	PHYPA_000803	A0A2K1L6G7	A9S2B5	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Predicted protein.	0.959
PHYPA_000027	PHYPA_000971	A0A2K1L6G7	A0A2K1L946	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ribosomal_S10 domain-containing protein.	0.956
PHYPA_000027	PHYPA_001102	A0A2K1L6G7	A0A2K1L9G3	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	0.964
PHYPA_000027	PHYPA_001165	A0A2K1L6G7	A9RPL4	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.967
PHYPA_000027	PHYPA_001271	A0A2K1L6G7	A9RQ30	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Predicted protein; Belongs to the universal ribosomal protein uS17 family.	0.993
PHYPA_000027	PHYPA_001312	A0A2K1L6G7	A0A2K1KIM6	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Uncharacterized protein.	0.971
PHYPA_000027	PHYPA_001313	A0A2K1L6G7	A9RQ90	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Predicted protein.	0.965
PHYPA_000027	PHYPA_002332	A0A2K1L6G7	A0A2K1L0I9	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Uncharacterized protein.	0.986
PHYPA_000027	PHYPA_002467	A0A2K1L6G7	A0A2K1L0Y0	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Uncharacterized protein.	0.965
PHYPA_000027	PHYPA_002699	A0A2K1L6G7	A0A2K1L1K3	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.967
PHYPA_000027	PHYPA_002896	A0A2K1L6G7	A0A2K1L262	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	S10_plectin domain-containing protein.	0.959
PHYPA_000027	PHYPA_003138	A0A2K1L6G7	A9SB19	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Predicted protein; Belongs to the universal ribosomal protein uS12 family.	0.994
PHYPA_000027	PHYPA_003175	A0A2K1L6G7	A0A2K1L2Y0	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Uncharacterized protein.	0.910
PHYPA_000027	PHYPA_003340	A0A2K1L6G7	A0A2K1L3E1	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.548
PHYPA_000027	PHYPA_003519	A0A2K1L6G7	A9RB78	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Predicted protein; Belongs to the universal ribosomal protein uS8 family.	0.960
PHYPA_000027	PHYPA_003646	A0A2K1L6G7	A0A2K1L4A8	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Uncharacterized protein.	0.936
PHYPA_000027	PHYPA_004439	A0A2K1L6G7	A0A2K1KUH2	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Uncharacterized protein.	0.936
PHYPA_000027	PHYPA_004864	A0A2K1L6G7	A9S4A4	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Predicted protein; Belongs to the universal ribosomal protein uS19 family.	0.956

page 1 of 597

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About