(5 nodes) Mixed, incl. Ribosomal protein S15P, and Ribosomal_S17 N-terminal network (Physcomitrella patens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PHYPA_022909	Uncharacterized protein. (103 aa)
	PHYPA_004952	Ubiquitin-like domain-containing protein. (128 aa)
	PHYPA_013583	Uncharacterized protein. (56 aa)
	PHYPA_010922	Predicted protein; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	PHYPA_001271	Predicted protein; Belongs to the universal ribosomal protein uS17 family. (160 aa)

Your Current Organism:

Physcomitrella patens

NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PHYPA_001271	PHYPA_004952	A9RQ30	A0A2K1KW14	Predicted protein; Belongs to the universal ribosomal protein uS17 family.	Ubiquitin-like domain-containing protein.	0.998
PHYPA_001271	PHYPA_010922	A9RQ30	A9RKW1	Predicted protein; Belongs to the universal ribosomal protein uS17 family.	Predicted protein; Belongs to the universal ribosomal protein uS15 family.	0.998
PHYPA_001271	PHYPA_013583	A9RQ30	A9RGD7	Predicted protein; Belongs to the universal ribosomal protein uS17 family.	Uncharacterized protein.	0.997
PHYPA_001271	PHYPA_022909	A9RQ30	A0A2K1J0G4	Predicted protein; Belongs to the universal ribosomal protein uS17 family.	Uncharacterized protein.	0.998
PHYPA_004952	PHYPA_001271	A0A2K1KW14	A9RQ30	Ubiquitin-like domain-containing protein.	Predicted protein; Belongs to the universal ribosomal protein uS17 family.	0.998
PHYPA_004952	PHYPA_010922	A0A2K1KW14	A9RKW1	Ubiquitin-like domain-containing protein.	Predicted protein; Belongs to the universal ribosomal protein uS15 family.	0.997
PHYPA_004952	PHYPA_013583	A0A2K1KW14	A9RGD7	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.997
PHYPA_004952	PHYPA_022909	A0A2K1KW14	A0A2K1J0G4	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.997
PHYPA_010922	PHYPA_001271	A9RKW1	A9RQ30	Predicted protein; Belongs to the universal ribosomal protein uS15 family.	Predicted protein; Belongs to the universal ribosomal protein uS17 family.	0.998
PHYPA_010922	PHYPA_004952	A9RKW1	A0A2K1KW14	Predicted protein; Belongs to the universal ribosomal protein uS15 family.	Ubiquitin-like domain-containing protein.	0.997
PHYPA_010922	PHYPA_013583	A9RKW1	A9RGD7	Predicted protein; Belongs to the universal ribosomal protein uS15 family.	Uncharacterized protein.	0.997
PHYPA_010922	PHYPA_022909	A9RKW1	A0A2K1J0G4	Predicted protein; Belongs to the universal ribosomal protein uS15 family.	Uncharacterized protein.	0.998
PHYPA_013583	PHYPA_001271	A9RGD7	A9RQ30	Uncharacterized protein.	Predicted protein; Belongs to the universal ribosomal protein uS17 family.	0.997
PHYPA_013583	PHYPA_004952	A9RGD7	A0A2K1KW14	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.997
PHYPA_013583	PHYPA_010922	A9RGD7	A9RKW1	Uncharacterized protein.	Predicted protein; Belongs to the universal ribosomal protein uS15 family.	0.997
PHYPA_013583	PHYPA_022909	A9RGD7	A0A2K1J0G4	Uncharacterized protein.	Uncharacterized protein.	0.997
PHYPA_022909	PHYPA_001271	A0A2K1J0G4	A9RQ30	Uncharacterized protein.	Predicted protein; Belongs to the universal ribosomal protein uS17 family.	0.998
PHYPA_022909	PHYPA_004952	A0A2K1J0G4	A0A2K1KW14	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.997
PHYPA_022909	PHYPA_010922	A0A2K1J0G4	A9RKW1	Uncharacterized protein.	Predicted protein; Belongs to the universal ribosomal protein uS15 family.	0.998
PHYPA_022909	PHYPA_013583	A0A2K1J0G4	A9RGD7	Uncharacterized protein.	Uncharacterized protein.	0.997

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