26 items (Physcomitrella patens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PHYPA_028983	Uncharacterized protein. (232 aa)
	PHYPA_027669	Uncharacterized protein. (224 aa)
	PHYPA_025230	Uncharacterized protein. (224 aa)
	PHYPA_024311	Uncharacterized protein. (163 aa)
	PHYPA_019347	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (99 aa)
	PHYPA_018832	Uncharacterized protein. (79 aa)
	PHYPA_017069	Uncharacterized protein. (209 aa)
	PHYPA_017687	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family. (212 aa)
	PHYPA_015007	Uncharacterized protein. (154 aa)
	PHYPA_012303	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (200 aa)
	PHYPA_008260	Uncharacterized protein. (128 aa)
	PHYPA_005841	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (258 aa)
	PHYPA_006606	50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. (137 aa)
	PHYPA_003808	Uncharacterized protein. (152 aa)
	PHYPA_004053	Uncharacterized protein. (291 aa)
	PHYPA_003676	Uncharacterized protein. (160 aa)
	PHYPA_003774	Uncharacterized protein. (99 aa)
	PHYPA_022936	Predicted protein. (188 aa)
	PHYPA_004762	Predicted protein. (108 aa)
	PHYPA_008356	Predicted protein. (129 aa)
	PHYPA_024570	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (113 aa)
	PHYPA_026257	Predicted protein. (187 aa)
	PHYPA_000952	Predicted protein; Belongs to the universal ribosomal protein uS15 family. (245 aa)
	PHYPA_029387	Predicted protein. (57 aa)
	rps2	Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. (241 aa)
	rpl21	50S ribosomal protein L21, chloroplastic; This protein binds to 23S rRNA. (114 aa)

Your Current Organism:

Physcomitrella patens

NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PHYPA_000952	PHYPA_003676	A9TLD1	A0A2K1L4D2	Predicted protein; Belongs to the universal ribosomal protein uS15 family.	Uncharacterized protein.	0.974
PHYPA_000952	PHYPA_003774	A9TLD1	A0A2K1L4S0	Predicted protein; Belongs to the universal ribosomal protein uS15 family.	Uncharacterized protein.	0.980
PHYPA_000952	PHYPA_003808	A9TLD1	A0A2K1KST4	Predicted protein; Belongs to the universal ribosomal protein uS15 family.	Uncharacterized protein.	0.937
PHYPA_000952	PHYPA_004053	A9TLD1	A0A2K1KTH5	Predicted protein; Belongs to the universal ribosomal protein uS15 family.	Uncharacterized protein.	0.980
PHYPA_000952	PHYPA_004762	A9TLD1	A9S4M2	Predicted protein; Belongs to the universal ribosomal protein uS15 family.	Predicted protein.	0.996
PHYPA_000952	PHYPA_005841	A9TLD1	A0A2K1KME2	Predicted protein; Belongs to the universal ribosomal protein uS15 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.989
PHYPA_000952	PHYPA_006606	A9TLD1	A0A2K1KPJ8	Predicted protein; Belongs to the universal ribosomal protein uS15 family.	50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.	0.937
PHYPA_000952	PHYPA_008260	A9TLD1	A0A2K1KLD8	Predicted protein; Belongs to the universal ribosomal protein uS15 family.	Uncharacterized protein.	0.941
PHYPA_000952	PHYPA_008356	A9TLD1	A9SGN8	Predicted protein; Belongs to the universal ribosomal protein uS15 family.	Predicted protein.	0.941
PHYPA_000952	PHYPA_012303	A9TLD1	A0A2K1K235	Predicted protein; Belongs to the universal ribosomal protein uS15 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.987
PHYPA_000952	PHYPA_015007	A9TLD1	A0A2K1JUP4	Predicted protein; Belongs to the universal ribosomal protein uS15 family.	Uncharacterized protein.	0.980
PHYPA_000952	PHYPA_017069	A9TLD1	A0A2K1JL09	Predicted protein; Belongs to the universal ribosomal protein uS15 family.	Uncharacterized protein.	0.937
PHYPA_000952	PHYPA_017687	A9TLD1	A0A2K1JN78	Predicted protein; Belongs to the universal ribosomal protein uS15 family.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.945
PHYPA_000952	PHYPA_018832	A9TLD1	A0A2K1JIT0	Predicted protein; Belongs to the universal ribosomal protein uS15 family.	Uncharacterized protein.	0.963
PHYPA_000952	PHYPA_019347	A9TLD1	A0A2K1JC19	Predicted protein; Belongs to the universal ribosomal protein uS15 family.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.969
PHYPA_000952	PHYPA_022936	A9TLD1	A9RNJ1	Predicted protein; Belongs to the universal ribosomal protein uS15 family.	Predicted protein.	0.963
PHYPA_000952	PHYPA_024311	A9TLD1	A0A2K1IYY8	Predicted protein; Belongs to the universal ribosomal protein uS15 family.	Uncharacterized protein.	0.963
PHYPA_000952	PHYPA_024570	A9TLD1	A9T1S0	Predicted protein; Belongs to the universal ribosomal protein uS15 family.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.984
PHYPA_000952	PHYPA_025230	A9TLD1	A0A2K1IVI1	Predicted protein; Belongs to the universal ribosomal protein uS15 family.	Uncharacterized protein.	0.963
PHYPA_000952	PHYPA_026257	A9TLD1	A9T571	Predicted protein; Belongs to the universal ribosomal protein uS15 family.	Predicted protein.	0.963

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