(29 nodes) Mixed, incl. Preribosome, large subunit precursor, and Brix domain network (Physcomitrella patens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PHYPA_030748	Uncharacterized protein. (592 aa)
	PHYPA_030313	Brix domain-containing protein. (333 aa)
	PHYPA_028597	Uncharacterized protein. (920 aa)
	PHYPA_024715	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (674 aa)
	PHYPA_023151	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family. (779 aa)
	PHYPA_022463	Uncharacterized protein. (1049 aa)
	PHYPA_021070	G domain-containing protein. (377 aa)
	PHYPA_017804	Uncharacterized protein. (451 aa)
	PHYPA_016142	Uncharacterized protein. (347 aa)
	PHYPA_016640	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (651 aa)
	PHYPA_014400	RNA helicase. (630 aa)
	PHYPA_014715	Uncharacterized protein. (1058 aa)
	PHYPA_012690	Uncharacterized protein. (822 aa)
	PHYPA_011095	RRM domain-containing protein. (267 aa)
	PHYPA_009458	Uncharacterized protein. (312 aa)
	PHYPA_007497	PUM-HD domain-containing protein. (641 aa)
	PHYPA_006445	Brix domain-containing protein. (337 aa)
	PHYPA_004837	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (595 aa)
	PHYPA_000462	Brix domain-containing protein. (351 aa)
	PHYPA_000485	Uncharacterized protein. (505 aa)
	PHYPA_000691	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (671 aa)
	PHYPA_000782	TRASH domain-containing protein. (169 aa)
	PHYPA_003308	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits. (844 aa)
	PHYPA_019788	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (186 aa)
	PHYPA_020773	Predicted protein. (329 aa)
	PHYPA_009791	Predicted protein. (260 aa)
	PHYPA_005277	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (358 aa)
	PHYPA_028015	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. (434 aa)
	PHYPA_031151	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (232 aa)

Your Current Organism:

Physcomitrella patens

NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PHYPA_000462	PHYPA_000485	A0A2K1L7M1	A0A2K1L7U3	Brix domain-containing protein.	Uncharacterized protein.	0.965
PHYPA_000462	PHYPA_000691	A0A2K1L7M1	A0A2K1L8B2	Brix domain-containing protein.	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.948
PHYPA_000462	PHYPA_000782	A0A2K1L7M1	A0A2K1L8I6	Brix domain-containing protein.	TRASH domain-containing protein.	0.988
PHYPA_000462	PHYPA_003308	A0A2K1L7M1	A9RQI9	Brix domain-containing protein.	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	0.992
PHYPA_000462	PHYPA_004837	A0A2K1L7M1	A0A2K1KVN8	Brix domain-containing protein.	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	0.997
PHYPA_000462	PHYPA_005277	A0A2K1L7M1	A9TBA8	Brix domain-containing protein.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.989
PHYPA_000462	PHYPA_006445	A0A2K1L7M1	A0A2K1KP40	Brix domain-containing protein.	Brix domain-containing protein.	0.988
PHYPA_000462	PHYPA_007497	A0A2K1L7M1	A0A2K1KJ62	Brix domain-containing protein.	PUM-HD domain-containing protein.	0.980
PHYPA_000462	PHYPA_009458	A0A2K1L7M1	A0A2K1KH43	Brix domain-containing protein.	Uncharacterized protein.	0.999
PHYPA_000462	PHYPA_009791	A0A2K1L7M1	A9SYB7	Brix domain-containing protein.	Predicted protein.	0.996
PHYPA_000462	PHYPA_011095	A0A2K1L7M1	A0A2K1K5Z6	Brix domain-containing protein.	RRM domain-containing protein.	0.993
PHYPA_000462	PHYPA_012690	A0A2K1L7M1	A0A2K1K356	Brix domain-containing protein.	Uncharacterized protein.	0.732
PHYPA_000462	PHYPA_014400	A0A2K1L7M1	A0A2K1JSW3	Brix domain-containing protein.	RNA helicase.	0.821
PHYPA_000462	PHYPA_014715	A0A2K1L7M1	A0A2K1JTT5	Brix domain-containing protein.	Uncharacterized protein.	0.944
PHYPA_000462	PHYPA_016142	A0A2K1L7M1	A0A2K1JQE3	Brix domain-containing protein.	Uncharacterized protein.	0.984
PHYPA_000462	PHYPA_016640	A0A2K1L7M1	A0A2K1JS12	Brix domain-containing protein.	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.948
PHYPA_000462	PHYPA_017804	A0A2K1L7M1	A0A2K1JN54	Brix domain-containing protein.	Uncharacterized protein.	0.998
PHYPA_000462	PHYPA_019788	A0A2K1L7M1	A9SQF1	Brix domain-containing protein.	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.998
PHYPA_000462	PHYPA_020773	A0A2K1L7M1	A9SR48	Brix domain-containing protein.	Predicted protein.	0.999
PHYPA_000462	PHYPA_021070	A0A2K1L7M1	A0A2K1J8T7	Brix domain-containing protein.	G domain-containing protein.	0.987

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