(15 nodes) GID complex, and Ran-binding protein Vid30/RanBPM/SPLA, SPRY domain network (Physcomitrella patens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PHYPA_030001	Uncharacterized protein. (466 aa)
	PHYPA_026516	Uncharacterized protein. (177 aa)
	PHYPA_023541	Uncharacterized protein. (429 aa)
	PHYPA_021408	Uncharacterized protein. (467 aa)
	PHYPA_016218	CTLH domain-containing protein. (410 aa)
	PHYPA_015210	Uncharacterized protein. (600 aa)
	PHYPA_012517	Uncharacterized protein. (653 aa)
	PHYPA_011853	Uncharacterized protein. (418 aa)
	PHYPA_009868	Uncharacterized protein. (600 aa)
	PHYPA_009110	Uncharacterized protein. (385 aa)
	PHYPA_010037	Predicted protein. (386 aa)
	PHYPA_028364	Predicted protein. (384 aa)
	PHYPA_007392	Predicted protein. (385 aa)
	PHYPA_029260	Predicted protein. (418 aa)
	PHYPA_019466	Predicted protein. (654 aa)

Your Current Organism:

Physcomitrella patens

NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PHYPA_007392	PHYPA_009110	A9SBV1	A0A2K1KG41	Predicted protein.	Uncharacterized protein.	0.544
PHYPA_007392	PHYPA_009868	A9SBV1	A0A2K1KA82	Predicted protein.	Uncharacterized protein.	0.751
PHYPA_007392	PHYPA_010037	A9SBV1	A9S273	Predicted protein.	Predicted protein.	0.554
PHYPA_007392	PHYPA_011853	A9SBV1	A0A2K1K851	Predicted protein.	Uncharacterized protein.	0.929
PHYPA_007392	PHYPA_012517	A9SBV1	A0A2K1K2P4	Predicted protein.	Uncharacterized protein.	0.773
PHYPA_007392	PHYPA_015210	A9SBV1	A0A2K1JV79	Predicted protein.	Uncharacterized protein.	0.751
PHYPA_007392	PHYPA_016218	A9SBV1	A0A2K1JQL6	Predicted protein.	CTLH domain-containing protein.	0.584
PHYPA_007392	PHYPA_019466	A9SBV1	A9T9J9	Predicted protein.	Predicted protein.	0.773
PHYPA_007392	PHYPA_021408	A9SBV1	A0A2K1J9V5	Predicted protein.	Uncharacterized protein.	0.729
PHYPA_007392	PHYPA_023541	A9SBV1	A0A2K1IWS9	Predicted protein.	Uncharacterized protein.	0.779
PHYPA_007392	PHYPA_026516	A9SBV1	A0A2K1ILP5	Predicted protein.	Uncharacterized protein.	0.702
PHYPA_007392	PHYPA_028364	A9SBV1	A9S551	Predicted protein.	Predicted protein.	0.545
PHYPA_007392	PHYPA_029260	A9SBV1	A9SPN7	Predicted protein.	Predicted protein.	0.929
PHYPA_007392	PHYPA_030001	A9SBV1	A0A2K1IEZ4	Predicted protein.	Uncharacterized protein.	0.729
PHYPA_009110	PHYPA_007392	A0A2K1KG41	A9SBV1	Uncharacterized protein.	Predicted protein.	0.544
PHYPA_009110	PHYPA_009868	A0A2K1KG41	A0A2K1KA82	Uncharacterized protein.	Uncharacterized protein.	0.751
PHYPA_009110	PHYPA_010037	A0A2K1KG41	A9S273	Uncharacterized protein.	Predicted protein.	0.554
PHYPA_009110	PHYPA_011853	A0A2K1KG41	A0A2K1K851	Uncharacterized protein.	Uncharacterized protein.	0.928
PHYPA_009110	PHYPA_012517	A0A2K1KG41	A0A2K1K2P4	Uncharacterized protein.	Uncharacterized protein.	0.773
PHYPA_009110	PHYPA_015210	A0A2K1KG41	A0A2K1JV79	Uncharacterized protein.	Uncharacterized protein.	0.751

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