STRINGSTRING
PHYPA_020641 PHYPA_020641 PHYPA_018165 PHYPA_018165 PHYPA_017989 PHYPA_017989 PHYPA_018316 PHYPA_018316 PHYPA_016074 PHYPA_016074 PHYPA_001480 PHYPA_001480 PHYPA_027680 PHYPA_027680 PHYPA_006260 PHYPA_006260 PHYPA_014555 PHYPA_014555 PHYPA_012890 PHYPA_012890 PHYPA_010871 PHYPA_010871 PHYPA_005966 PHYPA_005966 PHYPA_008220 PHYPA_008220 PHYPA_006567 PHYPA_006567 PHYPA_028396 PHYPA_028396 PHYPA_027987 PHYPA_027987 PHYPA_018323 PHYPA_018323
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PHYPA_02064140S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (146 aa)
PHYPA_01816560S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (71 aa)
PHYPA_01798960S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (231 aa)
PHYPA_018316Ribosomal_L28e domain-containing protein. (185 aa)
PHYPA_016074Ribosomal_L2_C domain-containing protein. (260 aa)
PHYPA_00148060S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (110 aa)
PHYPA_027680Predicted protein. (404 aa)
PHYPA_006260Predicted protein. (113 aa)
PHYPA_01455560S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (318 aa)
PHYPA_012890Predicted protein. (51 aa)
PHYPA_010871Ribosomal_L18_c domain-containing protein. (293 aa)
PHYPA_005966Predicted protein; Belongs to the universal ribosomal protein uL23 family. (155 aa)
PHYPA_008220Predicted protein; Belongs to the universal ribosomal protein uL3 family. (392 aa)
PHYPA_006567Predicted protein. (164 aa)
PHYPA_02839660S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (135 aa)
PHYPA_027987Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (216 aa)
PHYPA_018323Predicted protein. (133 aa)
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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