(17 nodes) Mixed, incl. Ribosomal large subunit assembly, and Ribosomal protein L36e network (Physcomitrella patens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PHYPA_022063	Ribosomal_L28e domain-containing protein. (148 aa)
	PHYPA_017987	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (231 aa)
	PHYPA_010509	Ribosomal_L30 domain-containing protein. (222 aa)
	PHYPA_000288	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (187 aa)
	PHYPA_003389	Predicted protein. (223 aa)
	PHYPA_003262	Predicted protein; Belongs to the eukaryotic ribosomal protein eL42 family. (105 aa)
	PHYPA_002776	Uncharacterized protein. (120 aa)
	PHYPA_018750	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (110 aa)
	PHYPA_000312	Predicted protein. (293 aa)
	PHYPA_017122	Predicted protein. (111 aa)
	PHYPA_000719	Predicted protein; Belongs to the universal ribosomal protein uL13 family. (208 aa)
	PHYPA_019309	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (135 aa)
	PHYPA_020764	Predicted protein. (113 aa)
	PHYPA_016877	Predicted protein. (164 aa)
	PHYPA_015552	Predicted protein. (133 aa)
	PHYPA_021261	Predicted protein. (189 aa)
	PHYPA_017452	Predicted protein; Belongs to the universal ribosomal protein uL23 family. (152 aa)

Your Current Organism:

Physcomitrella patens

NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.

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Export your current network:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PHYPA_000288	PHYPA_000312	A0A2K1L797	A9S013	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Predicted protein.	0.959
PHYPA_000288	PHYPA_000719	A0A2K1L797	A9SBR7	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Predicted protein; Belongs to the universal ribosomal protein uL13 family.	0.942
PHYPA_000288	PHYPA_002776	A0A2K1L797	A9RVD4	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Uncharacterized protein.	0.945
PHYPA_000288	PHYPA_003262	A0A2K1L797	A9RQN3	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Predicted protein; Belongs to the eukaryotic ribosomal protein eL42 family.	0.945
PHYPA_000288	PHYPA_003389	A0A2K1L797	A9RQA3	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Predicted protein.	0.939
PHYPA_000288	PHYPA_010509	A0A2K1L797	A0A2K1KC23	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Ribosomal_L30 domain-containing protein.	0.939
PHYPA_000288	PHYPA_015552	A0A2K1L797	A9SYS3	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Predicted protein.	0.947
PHYPA_000288	PHYPA_016877	A0A2K1L797	A9SRC4	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Predicted protein.	0.950
PHYPA_000288	PHYPA_017122	A0A2K1L797	A9S6Q2	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Predicted protein.	0.940
PHYPA_000288	PHYPA_017452	A0A2K1L797	A9U378	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Predicted protein; Belongs to the universal ribosomal protein uL23 family.	0.958
PHYPA_000288	PHYPA_017987	A0A2K1L797	A0A2K1JGA9	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	0.952
PHYPA_000288	PHYPA_018750	A0A2K1L797	A9RXF5	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	0.949
PHYPA_000288	PHYPA_019309	A0A2K1L797	A9SIT7	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.	0.955
PHYPA_000288	PHYPA_020764	A0A2K1L797	A9SR56	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Predicted protein.	0.943
PHYPA_000288	PHYPA_021261	A0A2K1L797	A9TUQ5	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Predicted protein.	0.947
PHYPA_000288	PHYPA_022063	A0A2K1L797	A0A2K1J3W5	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Ribosomal_L28e domain-containing protein.	0.944
PHYPA_000312	PHYPA_000288	A9S013	A0A2K1L797	Predicted protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.959
PHYPA_000312	PHYPA_000719	A9S013	A9SBR7	Predicted protein.	Predicted protein; Belongs to the universal ribosomal protein uL13 family.	0.953
PHYPA_000312	PHYPA_002776	A9S013	A9RVD4	Predicted protein.	Uncharacterized protein.	0.956
PHYPA_000312	PHYPA_003262	A9S013	A9RQN3	Predicted protein.	Predicted protein; Belongs to the eukaryotic ribosomal protein eL42 family.	0.953

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