21 items (Physcomitrella patens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PHYPA_015832	Uncharacterized protein. (304 aa)
	PHYPA_005354	Predicted protein. (172 aa)
	PHYPA_010068	Predicted protein. (204 aa)
	PHYPA_017212	Predicted protein. (108 aa)
	PHYPA_003878	Uncharacterized protein. (585 aa)
	PHYPA_005639	Uncharacterized protein. (116 aa)
	PHYPA_008863	DUF667 domain-containing protein. (218 aa)
	PHYPA_012756	DUF667 domain-containing protein. (682 aa)
	PHYPA_014675	Uncharacterized protein. (1334 aa)
	PHYPA_016278	Uncharacterized protein. (538 aa)
	PHYPA_017014	EF-hand domain-containing protein. (583 aa)
	PHYPA_020657	DUF667 domain-containing protein. (304 aa)
	PHYPA_022809	TOG domain-containing protein. (1181 aa)
	PHYPA_024034	C2H2-type domain-containing protein. (333 aa)
	PHYPA_024871	UVR domain-containing protein. (1056 aa)
	PHYPA_024569	Uncharacterized protein. (867 aa)
	PHYPA_026388	Dzip-like_N domain-containing protein. (778 aa)
	PHYPA_027284	Dzip-like_N domain-containing protein. (666 aa)
	PHYPA_028393	Uncharacterized protein. (109 aa)
	PHYPA_029332	Uncharacterized protein. (105 aa)
	PHYPA_030425	Uncharacterized protein. (266 aa)

Your Current Organism:

Physcomitrella patens

NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PHYPA_003878	PHYPA_024569	A0A2K1KT11	A0A2K1ITM0	Uncharacterized protein.	Uncharacterized protein.	0.682
PHYPA_005354	PHYPA_024569	A9SS79	A0A2K1ITM0	Predicted protein.	Uncharacterized protein.	0.682
PHYPA_005639	PHYPA_024569	A0A2K1KLU2	A0A2K1ITM0	Uncharacterized protein.	Uncharacterized protein.	0.682
PHYPA_014675	PHYPA_024569	A0A2K1JTP3	A0A2K1ITM0	Uncharacterized protein.	Uncharacterized protein.	0.514
PHYPA_015832	PHYPA_024569	A0A2K1JPK7	A0A2K1ITM0	Uncharacterized protein.	Uncharacterized protein.	0.996
PHYPA_015832	PHYPA_030425	A0A2K1JPK7	A0A2K1ICE3	Uncharacterized protein.	Uncharacterized protein.	0.995
PHYPA_016278	PHYPA_024569	A0A2K1JQT1	A0A2K1ITM0	Uncharacterized protein.	Uncharacterized protein.	0.682
PHYPA_017014	PHYPA_024569	A0A2K1JKW4	A0A2K1ITM0	EF-hand domain-containing protein.	Uncharacterized protein.	0.682
PHYPA_024569	PHYPA_003878	A0A2K1ITM0	A0A2K1KT11	Uncharacterized protein.	Uncharacterized protein.	0.682
PHYPA_024569	PHYPA_005354	A0A2K1ITM0	A9SS79	Uncharacterized protein.	Predicted protein.	0.682
PHYPA_024569	PHYPA_005639	A0A2K1ITM0	A0A2K1KLU2	Uncharacterized protein.	Uncharacterized protein.	0.682
PHYPA_024569	PHYPA_014675	A0A2K1ITM0	A0A2K1JTP3	Uncharacterized protein.	Uncharacterized protein.	0.514
PHYPA_024569	PHYPA_015832	A0A2K1ITM0	A0A2K1JPK7	Uncharacterized protein.	Uncharacterized protein.	0.996
PHYPA_024569	PHYPA_016278	A0A2K1ITM0	A0A2K1JQT1	Uncharacterized protein.	Uncharacterized protein.	0.682
PHYPA_024569	PHYPA_017014	A0A2K1ITM0	A0A2K1JKW4	Uncharacterized protein.	EF-hand domain-containing protein.	0.682
PHYPA_024569	PHYPA_030425	A0A2K1ITM0	A0A2K1ICE3	Uncharacterized protein.	Uncharacterized protein.	0.994
PHYPA_030425	PHYPA_015832	A0A2K1ICE3	A0A2K1JPK7	Uncharacterized protein.	Uncharacterized protein.	0.995
PHYPA_030425	PHYPA_024569	A0A2K1ICE3	A0A2K1ITM0	Uncharacterized protein.	Uncharacterized protein.	0.994

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