37 items (Physcomitrella patens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PHYPA_020657	DUF667 domain-containing protein. (304 aa)
	PHYPA_010068	Predicted protein. (204 aa)
	PHYPA_001665	Uncharacterized protein. (511 aa)
	PHYPA_005903	Uncharacterized protein. (1994 aa)
	PHYPA_006299	Uncharacterized protein. (1156 aa)
	PHYPA_006482	Uncharacterized protein. (1733 aa)
	PHYPA_008863	DUF667 domain-containing protein. (218 aa)
	PHYPA_005235	Thioredoxin domain-containing protein. (366 aa)
	PHYPA_002793	ARL2_Bind_BART domain-containing protein. (145 aa)
	PHYPA_001639	Uncharacterized protein. (171 aa)
	PHYPA_010162	Uncharacterized protein. (188 aa)
	PHYPA_010161	Uncharacterized protein. (165 aa)
	PHYPA_009810	Uncharacterized protein. (1353 aa)
	PHYPA_011614	Uncharacterized protein. (1063 aa)
	PHYPA_011368	Uncharacterized protein. (634 aa)
	PHYPA_012939	Uncharacterized protein. (113 aa)
	PHYPA_012756	DUF667 domain-containing protein. (682 aa)
	PHYPA_015476	Uncharacterized protein. (1352 aa)
	PHYPA_014675	Uncharacterized protein. (1334 aa)
	PHYPA_016768	Uncharacterized protein. (875 aa)
	PHYPA_016257	Uncharacterized protein. (431 aa)
	PHYPA_016032	WD_REPEATS_REGION domain-containing protein. (782 aa)
	PHYPA_015877	Uncharacterized protein. (808 aa)
	PHYPA_015832	Uncharacterized protein. (304 aa)
	PHYPA_019527	MIP-T3 domain-containing protein. (169 aa)
	PHYPA_019176	DUF4200 domain-containing protein. (601 aa)
	PHYPA_022809	TOG domain-containing protein. (1181 aa)
	PHYPA_024034	C2H2-type domain-containing protein. (333 aa)
	PHYPA_025227	Uncharacterized protein. (822 aa)
	PHYPA_024871	UVR domain-containing protein. (1056 aa)
	PHYPA_024821	Uncharacterized protein. (257 aa)
	PHYPA_024569	Uncharacterized protein. (867 aa)
	PHYPA_026388	Dzip-like_N domain-containing protein. (778 aa)
	PHYPA_025892	Uncharacterized protein. (1740 aa)
	PHYPA_027284	Dzip-like_N domain-containing protein. (666 aa)
	PHYPA_030623	WD_REPEATS_REGION domain-containing protein. (1146 aa)
	PHYPA_030425	Uncharacterized protein. (266 aa)

Your Current Organism:

Physcomitrella patens

NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PHYPA_001639	PHYPA_016257	A0A2K1LAZ8	A0A2K1JQQ6	Uncharacterized protein.	Uncharacterized protein.	0.459
PHYPA_001639	PHYPA_024569	A0A2K1LAZ8	A0A2K1ITM0	Uncharacterized protein.	Uncharacterized protein.	0.491
PHYPA_001639	PHYPA_024821	A0A2K1LAZ8	A0A2K1IUD9	Uncharacterized protein.	Uncharacterized protein.	0.481
PHYPA_001639	PHYPA_025892	A0A2K1LAZ8	A0A2K1IR65	Uncharacterized protein.	Uncharacterized protein.	0.469
PHYPA_001639	PHYPA_030623	A0A2K1LAZ8	A0A2K1ICY7	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.506
PHYPA_001665	PHYPA_006482	A0A2K1LB34	A0A2K1KP73	Uncharacterized protein.	Uncharacterized protein.	0.716
PHYPA_001665	PHYPA_012939	A0A2K1LB34	A0A2K1K3V5	Uncharacterized protein.	Uncharacterized protein.	0.992
PHYPA_001665	PHYPA_015832	A0A2K1LB34	A0A2K1JPK7	Uncharacterized protein.	Uncharacterized protein.	0.998
PHYPA_001665	PHYPA_015877	A0A2K1LB34	A0A2K1JQ12	Uncharacterized protein.	Uncharacterized protein.	0.950
PHYPA_001665	PHYPA_016032	A0A2K1LB34	A0A2K1JQ50	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.996
PHYPA_001665	PHYPA_016257	A0A2K1LB34	A0A2K1JQQ6	Uncharacterized protein.	Uncharacterized protein.	0.997
PHYPA_001665	PHYPA_016768	A0A2K1LB34	A0A2K1JS76	Uncharacterized protein.	Uncharacterized protein.	0.968
PHYPA_001665	PHYPA_019527	A0A2K1LB34	A0A2K1JCK8	Uncharacterized protein.	MIP-T3 domain-containing protein.	0.995
PHYPA_001665	PHYPA_024569	A0A2K1LB34	A0A2K1ITM0	Uncharacterized protein.	Uncharacterized protein.	0.995
PHYPA_001665	PHYPA_024821	A0A2K1LB34	A0A2K1IUD9	Uncharacterized protein.	Uncharacterized protein.	0.939
PHYPA_001665	PHYPA_025892	A0A2K1LB34	A0A2K1IR65	Uncharacterized protein.	Uncharacterized protein.	0.997
PHYPA_001665	PHYPA_030425	A0A2K1LB34	A0A2K1ICE3	Uncharacterized protein.	Uncharacterized protein.	0.994
PHYPA_001665	PHYPA_030623	A0A2K1LB34	A0A2K1ICY7	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.909
PHYPA_005903	PHYPA_012939	A0A2K1KMJ7	A0A2K1K3V5	Uncharacterized protein.	Uncharacterized protein.	0.572
PHYPA_005903	PHYPA_030623	A0A2K1KMJ7	A0A2K1ICY7	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.459

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