64 items (Physcomitrella patens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PHYPA_030361	Peptidase S59 domain-containing protein. (898 aa)
	PHYPA_030364	Peptidase S59 domain-containing protein. (1928 aa)
	PHYPA_030360	Uncharacterized protein. (153 aa)
	PHYPA_029469	Uncharacterized protein. (715 aa)
	PHYPA_028740	Uncharacterized protein. (528 aa)
	PHYPA_029240	Pyr_redox_2 domain-containing protein. (565 aa)
	PHYPA_027586	Uncharacterized protein. (2060 aa)
	PHYPA_027816	Uncharacterized protein. (206 aa)
	PHYPA_028168	Uncharacterized protein. (556 aa)
	PHYPA_027295	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family. (306 aa)
	PHYPA_027359	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family. (311 aa)
	PHYPA_027362	Uncharacterized protein. (58 aa)
	PHYPA_026160	Uncharacterized protein. (1248 aa)
	PHYPA_025083	Uncharacterized protein. (2107 aa)
	PHYPA_023603	Uncharacterized protein. (92 aa)
	PHYPA_023920	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family. (310 aa)
	PHYPA_021747	Uncharacterized protein. (668 aa)
	PHYPA_020433	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (747 aa)
	PHYPA_020542	C2 domain-containing protein. (904 aa)
	PHYPA_019755	Nsp1_C domain-containing protein. (751 aa)
	PHYPA_018400	Uncharacterized protein. (665 aa)
	PHYPA_017365	RanBD1 domain-containing protein. (218 aa)
	PHYPA_014941	NTF2 domain-containing protein. (46 aa)
	PHYPA_015189	Uncharacterized protein. (466 aa)
	PHYPA_015433	Uncharacterized protein. (228 aa)
	PHYPA_015625	DUF5311 domain-containing protein. (1495 aa)
	PHYPA_013943	Nup54 domain-containing protein. (463 aa)
	PHYPA_013020	Uncharacterized protein. (681 aa)
	PHYPA_011120	Uncharacterized protein. (1517 aa)
	PHYPA_011136	Uncharacterized protein. (1451 aa)
	PHYPA_011293	TPR_MLP1_2 domain-containing protein. (2355 aa)
	PHYPA_011605	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (1137 aa)
	PHYPA_009207	Nuclear pore protein. (861 aa)
	PHYPA_009425	Uncharacterized protein. (849 aa)
	PHYPA_009605	Uncharacterized protein. (341 aa)
	PHYPA_007535	Uncharacterized protein. (709 aa)
	PHYPA_007537	Uncharacterized protein. (369 aa)
	PHYPA_007576	Uncharacterized protein. (2059 aa)
	PHYPA_008149	Importin N-terminal domain-containing protein. (1054 aa)
	PHYPA_008285	Uncharacterized protein; Belongs to the WD repeat SEC13 family. (334 aa)
	PHYPA_006090	Uncharacterized protein. (3281 aa)
	PHYPA_006333	Uncharacterized protein. (327 aa)
	PHYPA_006499	Uncharacterized protein. (1914 aa)
	PHYPA_006793	RanBD1 domain-containing protein. (213 aa)
	PHYPA_004070	RanBD1 domain-containing protein. (479 aa)
	PHYPA_004487	RanBD1 domain-containing protein. (214 aa)
	PHYPA_004591	Peptidase S59 domain-containing protein. (999 aa)
	PHYPA_005090	Uncharacterized protein. (1526 aa)
	PHYPA_005459	Uncharacterized protein. (253 aa)
	PHYPA_000993	SET domain-containing protein. (517 aa)
	PHYPA_001171	Uncharacterized protein. (673 aa)
	PHYPA_014940	Predicted protein. (123 aa)
	PHYPA_023397	Predicted protein. (347 aa)
	PHYPA_018500	Predicted protein. (486 aa)
	PHYPA_030877	Predicted protein. (648 aa)
	PHYPA_010315	Predicted protein. (122 aa)
	PHYPA_003191	Predicted protein. (123 aa)
	PHYPA_007705	Predicted protein. (358 aa)
	PHYPA_008943	Predicted protein. (682 aa)
	PHYPA_030396	Predicted protein. (216 aa)
	PHYPA_002863	Predicted protein. (679 aa)
	PHYPA_024039	Predicted protein; Belongs to the WD repeat SEC13 family. (307 aa)
	PHYPA_008153	Predicted protein. (1054 aa)
	PHYPA_009025	Predicted protein. (358 aa)

Your Current Organism:

Physcomitrella patens

NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PHYPA_001171	PHYPA_007537	A0A2K1L9P3	A0A2K1KJA9	Uncharacterized protein.	Uncharacterized protein.	0.425
PHYPA_001171	PHYPA_028740	A0A2K1L9P3	A0A2K1IFU6	Uncharacterized protein.	Uncharacterized protein.	0.425
PHYPA_002863	PHYPA_007537	A9TPL7	A0A2K1KJA9	Predicted protein.	Uncharacterized protein.	0.425
PHYPA_002863	PHYPA_028740	A9TPL7	A0A2K1IFU6	Predicted protein.	Uncharacterized protein.	0.425
PHYPA_003191	PHYPA_007537	A9SU69	A0A2K1KJA9	Predicted protein.	Uncharacterized protein.	0.425
PHYPA_003191	PHYPA_007705	A9SU69	A9T5N8	Predicted protein.	Predicted protein.	0.547
PHYPA_003191	PHYPA_009025	A9SU69	A9U3T2	Predicted protein.	Predicted protein.	0.547
PHYPA_003191	PHYPA_010315	A9SU69	A9SG98	Predicted protein.	Predicted protein.	0.545
PHYPA_003191	PHYPA_013943	A9SU69	A0A2K1JZ68	Predicted protein.	Nup54 domain-containing protein.	0.651
PHYPA_003191	PHYPA_014940	A9SU69	A9RIC1	Predicted protein.	Predicted protein.	0.546
PHYPA_003191	PHYPA_014941	A9SU69	A0A2K1JUH1	Predicted protein.	NTF2 domain-containing protein.	0.540
PHYPA_003191	PHYPA_018500	A9SU69	A9RYQ9	Predicted protein.	Predicted protein.	0.651
PHYPA_003191	PHYPA_019755	A9SU69	A0A2K1JD76	Predicted protein.	Nsp1_C domain-containing protein.	0.540
PHYPA_003191	PHYPA_028740	A9SU69	A0A2K1IFU6	Predicted protein.	Uncharacterized protein.	0.425
PHYPA_004070	PHYPA_004591	A0A2K1KTG0	A0A2K1KUY3	RanBD1 domain-containing protein.	Peptidase S59 domain-containing protein.	0.696
PHYPA_004070	PHYPA_005090	A0A2K1KTG0	A0A2K1KWC6	RanBD1 domain-containing protein.	Uncharacterized protein.	0.696
PHYPA_004070	PHYPA_005459	A0A2K1KTG0	A0A2K1KXE8	RanBD1 domain-containing protein.	Uncharacterized protein.	0.885
PHYPA_004070	PHYPA_006333	A0A2K1KTG0	A0A2K1KNU8	RanBD1 domain-containing protein.	Uncharacterized protein.	0.696
PHYPA_004070	PHYPA_006499	A0A2K1KTG0	A0A2K1KP90	RanBD1 domain-containing protein.	Uncharacterized protein.	0.755
PHYPA_004070	PHYPA_007537	A0A2K1KTG0	A0A2K1KJA9	RanBD1 domain-containing protein.	Uncharacterized protein.	0.851

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