(108 nodes) Cytosolic small ribosomal subunit network (Physcomitrella patens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PHYPA_006329	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (135 aa)
	PHYPA_006191	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (263 aa)
	PHYPA_005708	Uncharacterized protein. (135 aa)
	PHYPA_007751	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (119 aa)
	PHYPA_001312	Uncharacterized protein. (65 aa)
	PHYPA_009546	Uncharacterized protein. (82 aa)
	PHYPA_008700	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (126 aa)
	PHYPA_011113	C-type lectin domain-containing protein. (642 aa)
	PHYPA_015144	Uncharacterized protein. (50 aa)
	PHYPA_015137	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (254 aa)
	PHYPA_016105	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (135 aa)
	PHYPA_016018	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (150 aa)
	PHYPA_015869	Ubiquitin-like domain-containing protein. (196 aa)
	PHYPA_015744	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (136 aa)
	PHYPA_018300	Uncharacterized protein. (88 aa)
	PHYPA_018145	Ribosomal_S10 domain-containing protein. (121 aa)
	PHYPA_020234	Uncharacterized protein. (158 aa)
	PHYPA_020033	Ribosomal_S10 domain-containing protein. (121 aa)
	PHYPA_021080	Ribosomal_S4 domain-containing protein. (139 aa)
	PHYPA_020850	Uncharacterized protein. (84 aa)
	PHYPA_020641	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (146 aa)
	PHYPA_021641	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (170 aa)
	PHYPA_021618	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (146 aa)
	PHYPA_022909	Uncharacterized protein. (103 aa)
	PHYPA_022638	40S ribosomal protein S27. (157 aa)
	PHYPA_027265	Uncharacterized protein. (60 aa)
	PHYPA_028256	Uncharacterized protein. (314 aa)
	PHYPA_027955	Ribosomal_S10 domain-containing protein. (109 aa)
	PHYPA_028864	Uncharacterized protein. (112 aa)
	PHYPA_028674	Ribosomal_S5_C domain-containing protein. (152 aa)
	PHYPA_029438	Uncharacterized protein. (211 aa)
	PHYPA_031067	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (149 aa)
	PHYPA_030744	Ribosomal_S3_C domain-containing protein. (111 aa)
	PHYPA_028008	Predicted protein. (178 aa)
	PHYPA_011191	Predicted protein; Belongs to the universal ribosomal protein uS5 family. (280 aa)
	PHYPA_025318	Predicted protein; Belongs to the universal ribosomal protein uS5 family. (280 aa)
	PHYPA_020708	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (126 aa)
	PHYPA_029228	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (195 aa)
	PHYPA_009992	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (249 aa)
	PHYPA_016731	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (81 aa)
	PHYPA_028683	Predicted protein; Belongs to the universal ribosomal protein uS5 family. (280 aa)
	PHYPA_017879	Predicted protein. (177 aa)
	PHYPA_020233	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (247 aa)
	PHYPA_020223	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (247 aa)
	PHYPA_017588	Predicted protein; Belongs to the universal ribosomal protein uS19 family. (150 aa)
	PHYPA_017589	Predicted protein; Belongs to the universal ribosomal protein uS4 family. (197 aa)
	PHYPA_029448	Predicted protein; Belongs to the universal ribosomal protein uS13 family. (152 aa)
	PHYPA_011523	Predicted protein. (156 aa)
	PHYPA_026476	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (264 aa)
	PHYPA_026479	40S ribosomal protein S27. (86 aa)
	PHYPA_023965	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (254 aa)
	PHYPA_024541	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (195 aa)
	PHYPA_011937	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (195 aa)
	PHYPA_022117	Predicted protein. (142 aa)
	PHYPA_013243	Predicted protein. (180 aa)
	PHYPA_027307	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (263 aa)
	PHYPA_027308	40S ribosomal protein S27. (86 aa)
	PHYPA_016019	Predicted protein; Belongs to the universal ribosomal protein uS4 family. (198 aa)
	PHYPA_015140	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (259 aa)
	PHYPA_007158	Predicted protein; Belongs to the universal ribosomal protein uS13 family. (152 aa)
	PHYPA_014201	Predicted protein. (176 aa)
	PHYPA_003138	Predicted protein; Belongs to the universal ribosomal protein uS12 family. (142 aa)
	PHYPA_014862	Predicted protein; Belongs to the universal ribosomal protein uS8 family. (130 aa)
	PHYPA_015863	Predicted protein. (155 aa)
	PHYPA_030831	Predicted protein. (144 aa)
	PHYPA_030773	Predicted protein; Belongs to the universal ribosomal protein uS4 family. (198 aa)
	PHYPA_004864	Predicted protein; Belongs to the universal ribosomal protein uS19 family. (150 aa)
	PHYPA_016464	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (263 aa)
	PHYPA_000185	Predicted protein. (130 aa)
	PHYPA_000803	Predicted protein. (180 aa)
	PHYPA_014498	Predicted protein. (144 aa)
	PHYPA_016099	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (135 aa)
	PHYPA_018472	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (108 aa)
	PHYPA_018737	Predicted protein. (142 aa)
	PHYPA_018734	Predicted protein. (65 aa)
	PHYPA_015319	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (249 aa)
	PHYPA_007282	Predicted protein; Belongs to the universal ribosomal protein uS3 family. (230 aa)
	PHYPA_012591	Predicted protein; Belongs to the universal ribosomal protein uS3 family. (231 aa)
	PHYPA_010917	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (62 aa)
	PHYPA_001313	Predicted protein. (142 aa)
	PHYPA_001165	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (108 aa)
	PHYPA_028534	Predicted protein. (182 aa)
	PHYPA_022637	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (265 aa)
	PHYPA_000720	40S ribosomal protein S27. (86 aa)
	PHYPA_010922	Predicted protein; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	PHYPA_009101	Predicted protein; Belongs to the universal ribosomal protein uS4 family. (198 aa)
	PHYPA_009306	Predicted protein; Belongs to the universal ribosomal protein uS13 family. (152 aa)
	PHYPA_009302	Predicted protein; Belongs to the universal ribosomal protein uS13 family. (152 aa)
	PHYPA_004865	Predicted protein; Belongs to the universal ribosomal protein uS4 family. (198 aa)
	PHYPA_006430	Predicted protein. (155 aa)
	PHYPA_027859	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (81 aa)
	PHYPA_027778	Predicted protein; Belongs to the universal ribosomal protein uS5 family. (280 aa)
	PHYPA_013583	Uncharacterized protein. (56 aa)
	PHYPA_010654	Predicted protein. (144 aa)
	PHYPA_003519	Predicted protein; Belongs to the universal ribosomal protein uS8 family. (130 aa)
	PHYPA_000971	Ribosomal_S10 domain-containing protein. (121 aa)
	PHYPA_000259	Uncharacterized protein; Belongs to the universal ribosomal protein uS15 family. (72 aa)
	PHYPA_000027	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (58 aa)
	PHYPA_003646	Uncharacterized protein. (144 aa)
	PHYPA_003349	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (106 aa)
	PHYPA_003340	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (84 aa)
	PHYPA_002896	S10_plectin domain-containing protein. (175 aa)
	PHYPA_002699	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (107 aa)
	PHYPA_002467	Uncharacterized protein. (173 aa)
	PHYPA_002332	Uncharacterized protein. (78 aa)
	PHYPA_004672	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (135 aa)
	PHYPA_004439	Uncharacterized protein. (132 aa)
	PHYPA_006250	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (234 aa)

Your Current Organism:

Physcomitrella patens

NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PHYPA_000027	PHYPA_000185	A0A2K1L6G7	A9S3C9	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Predicted protein.	0.960
PHYPA_000027	PHYPA_000259	A0A2K1L6G7	A0A2K1L719	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS15 family.	0.993
PHYPA_000027	PHYPA_000720	A0A2K1L6G7	A9RMR9	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	40S ribosomal protein S27.	0.908
PHYPA_000027	PHYPA_000803	A0A2K1L6G7	A9S2B5	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Predicted protein.	0.959
PHYPA_000027	PHYPA_000971	A0A2K1L6G7	A0A2K1L946	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ribosomal_S10 domain-containing protein.	0.956
PHYPA_000027	PHYPA_001165	A0A2K1L6G7	A9RPL4	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.967
PHYPA_000027	PHYPA_001312	A0A2K1L6G7	A0A2K1KIM6	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Uncharacterized protein.	0.971
PHYPA_000027	PHYPA_001313	A0A2K1L6G7	A9RQ90	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Predicted protein.	0.965
PHYPA_000027	PHYPA_002332	A0A2K1L6G7	A0A2K1L0I9	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Uncharacterized protein.	0.986
PHYPA_000027	PHYPA_002467	A0A2K1L6G7	A0A2K1L0Y0	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Uncharacterized protein.	0.965
PHYPA_000027	PHYPA_002699	A0A2K1L6G7	A0A2K1L1K3	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.967
PHYPA_000027	PHYPA_002896	A0A2K1L6G7	A0A2K1L262	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	S10_plectin domain-containing protein.	0.959
PHYPA_000027	PHYPA_003138	A0A2K1L6G7	A9SB19	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Predicted protein; Belongs to the universal ribosomal protein uS12 family.	0.994
PHYPA_000027	PHYPA_003340	A0A2K1L6G7	A0A2K1L3E1	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.548
PHYPA_000027	PHYPA_003519	A0A2K1L6G7	A9RB78	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Predicted protein; Belongs to the universal ribosomal protein uS8 family.	0.960
PHYPA_000027	PHYPA_003646	A0A2K1L6G7	A0A2K1L4A8	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Uncharacterized protein.	0.936
PHYPA_000027	PHYPA_004439	A0A2K1L6G7	A0A2K1KUH2	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Uncharacterized protein.	0.936
PHYPA_000027	PHYPA_004672	A0A2K1L6G7	A0A2K1KV85	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	0.941
PHYPA_000027	PHYPA_004864	A0A2K1L6G7	A9S4A4	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Predicted protein; Belongs to the universal ribosomal protein uS19 family.	0.956
PHYPA_000027	PHYPA_004865	A0A2K1L6G7	A9RK26	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Predicted protein; Belongs to the universal ribosomal protein uS4 family.	0.943

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