(32 nodes) LIS1 homology motif network (Physcomitrella patens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PHYPA_019549	Uncharacterized protein. (1105 aa)
	PHYPA_018065	LisH domain-containing protein. (415 aa)
	PHYPA_018052	Uncharacterized protein. (602 aa)
	PHYPA_017028	Uncharacterized protein. (569 aa)
	PHYPA_015210	Uncharacterized protein. (600 aa)
	PHYPA_013462	Uncharacterized protein. (604 aa)
	PHYPA_003503	LisH domain-containing protein. (248 aa)
	PHYPA_000158	Uncharacterized protein. (600 aa)
	PHYPA_000156	Uncharacterized protein. (860 aa)
	PHYPA_000576	LisH domain-containing protein. (1969 aa)
	PHYPA_015477	Predicted protein. (513 aa)
	PHYPA_010037	Predicted protein. (386 aa)
	PHYPA_028364	Predicted protein. (384 aa)
	PHYPA_007392	Predicted protein. (385 aa)
	PHYPA_005362	Predicted protein. (678 aa)
	PHYPA_009811	Predicted protein. (513 aa)
	PHYPA_019918	Predicted protein. (216 aa)
	PHYPA_013010	Uncharacterized protein. (1105 aa)
	PHYPA_011853	Uncharacterized protein. (418 aa)
	PHYPA_009868	Uncharacterized protein. (600 aa)
	PHYPA_009110	Uncharacterized protein. (385 aa)
	PHYPA_005542	Uncharacterized protein. (1136 aa)
	PHYPA_003167	LisH domain-containing protein. (2026 aa)
	PHYPA_012439	Uncharacterized protein. (215 aa)
	PHYPA_003501	Uncharacterized protein. (979 aa)
	PHYPA_028454	Uncharacterized protein. (229 aa)
	PHYPA_028058	Uncharacterized protein. (233 aa)
	PHYPA_026516	Uncharacterized protein. (177 aa)
	PHYPA_023541	Uncharacterized protein. (429 aa)
	PHYPA_023441	LisH domain-containing protein. (1216 aa)
	PHYPA_023447	LisH domain-containing protein. (1117 aa)
	PHYPA_014237	Uncharacterized protein. (233 aa)

Your Current Organism:

Physcomitrella patens

NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PHYPA_000156	PHYPA_013010	A0A2K1L6S7	A0A2K1K424	Uncharacterized protein.	Uncharacterized protein.	0.532
PHYPA_000156	PHYPA_019549	A0A2K1L6S7	A0A2K1JCL5	Uncharacterized protein.	Uncharacterized protein.	0.531
PHYPA_000158	PHYPA_013010	A0A2K1L6S0	A0A2K1K424	Uncharacterized protein.	Uncharacterized protein.	0.523
PHYPA_000158	PHYPA_019549	A0A2K1L6S0	A0A2K1JCL5	Uncharacterized protein.	Uncharacterized protein.	0.522
PHYPA_000576	PHYPA_003167	A0A2K1L817	A0A2K1L2W9	LisH domain-containing protein.	LisH domain-containing protein.	0.544
PHYPA_003167	PHYPA_000576	A0A2K1L2W9	A0A2K1L817	LisH domain-containing protein.	LisH domain-containing protein.	0.544
PHYPA_003501	PHYPA_013010	A0A2K1L3U9	A0A2K1K424	Uncharacterized protein.	Uncharacterized protein.	0.540
PHYPA_003501	PHYPA_019549	A0A2K1L3U9	A0A2K1JCL5	Uncharacterized protein.	Uncharacterized protein.	0.539
PHYPA_007392	PHYPA_009110	A9SBV1	A0A2K1KG41	Predicted protein.	Uncharacterized protein.	0.544
PHYPA_007392	PHYPA_009868	A9SBV1	A0A2K1KA82	Predicted protein.	Uncharacterized protein.	0.751
PHYPA_007392	PHYPA_010037	A9SBV1	A9S273	Predicted protein.	Predicted protein.	0.554
PHYPA_007392	PHYPA_011853	A9SBV1	A0A2K1K851	Predicted protein.	Uncharacterized protein.	0.929
PHYPA_007392	PHYPA_012439	A9SBV1	A0A2K1K2G2	Predicted protein.	Uncharacterized protein.	0.632
PHYPA_007392	PHYPA_014237	A9SBV1	A0A2K1K010	Predicted protein.	Uncharacterized protein.	0.632
PHYPA_007392	PHYPA_015210	A9SBV1	A0A2K1JV79	Predicted protein.	Uncharacterized protein.	0.751
PHYPA_007392	PHYPA_019918	A9SBV1	A9TCX9	Predicted protein.	Predicted protein.	0.632
PHYPA_007392	PHYPA_023541	A9SBV1	A0A2K1IWS9	Predicted protein.	Uncharacterized protein.	0.779
PHYPA_007392	PHYPA_026516	A9SBV1	A0A2K1ILP5	Predicted protein.	Uncharacterized protein.	0.702
PHYPA_007392	PHYPA_028058	A9SBV1	A0A2K1IJB5	Predicted protein.	Uncharacterized protein.	0.632
PHYPA_007392	PHYPA_028364	A9SBV1	A9S551	Predicted protein.	Predicted protein.	0.545

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