STRINGSTRING
PHYPA_007697 PHYPA_007697 PHYPA_030040 PHYPA_030040 PHYPA_015558 PHYPA_015558 PHYPA_009633 PHYPA_009633 PHYPA_011630 PHYPA_011630 PHYPA_012889 PHYPA_012889 PHYPA_024097 PHYPA_024097 PHYPA_024190 PHYPA_024190 PHYPA_022606 PHYPA_022606 PHYPA_027778 PHYPA_027778 PHYPA_001710 PHYPA_001710 PHYPA_000214 PHYPA_000214 PHYPA_005841 PHYPA_005841 PHYPA_007686 PHYPA_007686 PHYPA_008876 PHYPA_008876 PHYPA_028105 PHYPA_028105 PHYPA_026526 PHYPA_026526 PHYPA_026673 PHYPA_026673 TOP6B TOP6B PHYPA_027249 PHYPA_027249 PHYPA_023637 PHYPA_023637 PHYPA_023718 PHYPA_023718 PHYPA_023368 PHYPA_023368 PHYPA_022450 PHYPA_022450 PHYPA_020477 PHYPA_020477 PHYPA_017188 PHYPA_017188 PHYPA_018173 PHYPA_018173 PHYPA_017334 PHYPA_017334 PHYPA_025318 PHYPA_025318 PHYPA_024432 PHYPA_024432 PHYPA_012266 PHYPA_012266 PHYPA_031006 PHYPA_031006 PHYPA_027393 PHYPA_027393 PHYPA_028683 PHYPA_028683 PHYPA_008685 PHYPA_008685 PHYPA_008406 PHYPA_008406 PHYPA_010537 PHYPA_010537 PHYPA_015695 PHYPA_015695 PHYPA_011948 PHYPA_011948 PHYPA_012654 PHYPA_012654 PHYPA_012303 PHYPA_012303 PHYPA_013636 PHYPA_013636 PHYPA_013637 PHYPA_013637 PHYPA_015561 PHYPA_015561 PHYPA_014871 PHYPA_014871 PHYPA_028674 PHYPA_028674 PHYPA_016156 PHYPA_016156 PHYPA_011191 PHYPA_011191 PHYPA_009775 PHYPA_009775
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PHYPA_007697Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids. Belongs to the diphosphomevalonate decarboxylase family. (423 aa)
PHYPA_030040Predicted protein. (426 aa)
PHYPA_015558Predicted protein. (843 aa)
PHYPA_009633Predicted protein. (982 aa)
PHYPA_011630Predicted protein; Belongs to the universal ribosomal protein uS5 family. (346 aa)
PHYPA_012889Predicted protein. (498 aa)
PHYPA_024097Predicted protein. (498 aa)
PHYPA_024190Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. (766 aa)
PHYPA_022606Predicted protein; Belongs to the universal ribosomal protein uS9 family. (144 aa)
PHYPA_027778Predicted protein; Belongs to the universal ribosomal protein uS5 family. (280 aa)
PHYPA_001710RECA_2 domain-containing protein. (616 aa)
PHYPA_000214S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (292 aa)
PHYPA_005841Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (258 aa)
PHYPA_007686Uncharacterized protein. (405 aa)
PHYPA_008876Diphosphomevalonate decarboxylase. (338 aa)
PHYPA_028105Uncharacterized protein. (426 aa)
PHYPA_026526Mevalonate kinase. (424 aa)
PHYPA_026673DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner. (759 aa)
TOP6BDNA topoisomerase 6 subunit B; Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles. Relaxes both positive and negative superturns and exhibits a strong decatenase activity. The B subunit binds ATP; Belongs to the TOP6B family. (667 aa)
PHYPA_027249Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. (778 aa)
PHYPA_023637DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks. (1449 aa)
PHYPA_023718DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner. (761 aa)
PHYPA_023368DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks. (1447 aa)
PHYPA_022450Tr-type G domain-containing protein. (1041 aa)
PHYPA_020477Uncharacterized protein. (1006 aa)
PHYPA_017188Uncharacterized protein. (1060 aa)
PHYPA_018173Lon proteolytic domain-containing protein; Belongs to the peptidase S16 family. (624 aa)
PHYPA_017334Lon protease homolog, mitochondrial; ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial DNA in a site-specific manner; Belongs to the peptidase S16 family. (1044 aa)
PHYPA_025318Predicted protein; Belongs to the universal ribosomal protein uS5 family. (280 aa)
PHYPA_024432Predicted protein; Belongs to the universal ribosomal protein uS9 family. (144 aa)
PHYPA_012266Predicted protein; Belongs to the universal ribosomal protein uS9 family. (143 aa)
PHYPA_031006Predicted protein. (982 aa)
PHYPA_027393Predicted protein; Belongs to the universal ribosomal protein uS9 family. (144 aa)
PHYPA_028683Predicted protein; Belongs to the universal ribosomal protein uS5 family. (280 aa)
PHYPA_008685Uncharacterized protein. (1021 aa)
PHYPA_008406Uncharacterized protein. (499 aa)
PHYPA_010537S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (293 aa)
PHYPA_015695Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (225 aa)
PHYPA_011948Uncharacterized protein. (920 aa)
PHYPA_012654Lon protease homolog 2, peroxisomal; ATP-dependent serine protease that mediates the selective degradation of misfolded and unassembled polypeptides in the peroxisomal matrix. Necessary for type 2 peroxisome targeting signal (PTS2)-containing protein processing and facilitates peroxisome matrix protein import; Belongs to the peptidase S16 family. ECO:0000256|PROSITE-. (900 aa)
PHYPA_012303Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (200 aa)
PHYPA_013636DNA_mis_repair domain-containing protein. (723 aa)
PHYPA_013637Lon proteolytic domain-containing protein; Belongs to the peptidase S16 family. (646 aa)
PHYPA_015561Tr-type G domain-containing protein. (567 aa)
PHYPA_014871S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (293 aa)
PHYPA_028674Ribosomal_S5_C domain-containing protein. (152 aa)
PHYPA_016156Elongation factor G, chloroplastic; Chloroplast-localized elongation factor EF-G involved in protein synthesis in plastids. Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl- tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. (786 aa)
PHYPA_011191Predicted protein; Belongs to the universal ribosomal protein uS5 family. (280 aa)
PHYPA_009775Predicted protein. (843 aa)
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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