STRINGSTRING
PHYPA_027431 PHYPA_027431 PHYPA_003107 PHYPA_003107 PHYPA_003389 PHYPA_003389 PHYPA_000124 PHYPA_000124 PHYPA_014571 PHYPA_014571 rpl16 rpl16 rpl16-2 rpl16-2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PHYPA_027431Ribosomal_L16 domain-containing protein. (279 aa)
PHYPA_003107Ribosomal_L16 domain-containing protein; Belongs to the universal ribosomal protein uL16 family. (135 aa)
PHYPA_003389Predicted protein. (223 aa)
PHYPA_000124Predicted protein. (223 aa)
PHYPA_014571Predicted protein. (223 aa)
rpl16Ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family. (135 aa)
rpl16-250S ribosomal protein L16, chloroplastic; Belongs to the universal ribosomal protein uL16 family. (138 aa)
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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