Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PHYPA_023111 | PHYPA_025957 | A9RDT9 | A0A2K1IRD0 | Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. | Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. | 0.900 |
| PHYPA_023111 | PpPPR_38 | A9RDT9 | D1MN89 | Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. | Pentatricopeptide repeat protein. | 0.465 |
| PHYPA_025957 | PHYPA_023111 | A0A2K1IRD0 | A9RDT9 | Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. | Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. | 0.900 |
| PHYPA_025957 | PpPPR_38 | A0A2K1IRD0 | D1MN89 | Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. | Pentatricopeptide repeat protein. | 0.465 |
| PpPPR_38 | PHYPA_023111 | D1MN89 | A9RDT9 | Pentatricopeptide repeat protein. | Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. | 0.465 |
| PpPPR_38 | PHYPA_025957 | D1MN89 | A0A2K1IRD0 | Pentatricopeptide repeat protein. | Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. | 0.465 |
| PpPPR_38 | clpP | D1MN89 | Q6YXM7 | Pentatricopeptide repeat protein. | ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | 0.651 |
| atpA | atpF | Q6YXK3 | Q6YXK2 | ATP synthase subunit alpha, chloroplastic; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | ATP synthase subunit b, chloroplastic; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.999 |
| atpA | atpI | Q6YXK3 | Q6YXK0 | ATP synthase subunit alpha, chloroplastic; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | ATP synthase subunit a, chloroplastic; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. | 0.999 |
| atpA | clpP | Q6YXK3 | Q6YXM7 | ATP synthase subunit alpha, chloroplastic; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | 0.838 |
| atpA | ndhA | Q6YXK3 | Q6YXP8 | ATP synthase subunit alpha, chloroplastic; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic; NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. | 0.835 |
| atpA | ndhB | Q6YXK3 | Q6YXR9 | ATP synthase subunit alpha, chloroplastic; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic; NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. | 0.759 |
| atpA | petB | Q6YXK3 | Q6YXN2 | ATP synthase subunit alpha, chloroplastic; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | Cytochrome b6; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. | 0.859 |
| atpA | rpl16 | Q6YXK3 | Q1XG98 | ATP synthase subunit alpha, chloroplastic; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | Ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family. | 0.858 |
| atpA | rpl16-2 | Q6YXK3 | Q6YXK9 | ATP synthase subunit alpha, chloroplastic; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | 50S ribosomal protein L16, chloroplastic; Belongs to the universal ribosomal protein uL16 family. | 0.895 |
| atpA | rps14 | Q6YXK3 | Q1XG96 | ATP synthase subunit alpha, chloroplastic; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | Ribosomal protein S14. | 0.889 |
| atpA | rps14-2 | Q6YXK3 | Q8MFA1 | ATP synthase subunit alpha, chloroplastic; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | 30S ribosomal protein S14, chloroplastic; Binds 16S rRNA, required for the assembly of 30S particles. | 0.889 |
| atpA | rps7 | Q6YXK3 | Q1XGB2 | ATP synthase subunit alpha, chloroplastic; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | Ribosomal protein S7. | 0.872 |
| atpA | rps7-2 | Q6YXK3 | Q6YXS0 | ATP synthase subunit alpha, chloroplastic; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | 30S ribosomal protein S7, chloroplastic; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. | 0.900 |
| atpF | atpA | Q6YXK2 | Q6YXK3 | ATP synthase subunit b, chloroplastic; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | ATP synthase subunit alpha, chloroplastic; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | 0.999 |
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