37 items (Physcomitrella patens) - STRING interaction network

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second shell of interactors

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proteins of unknown 3D structure

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Your Input:
	nad4	NADH-ubiquinone oxidoreductase chain 4; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. (495 aa)
	nad2	NADH dehydrogenase subunit 2. (489 aa)
	PHYPA_029135	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family. (1042 aa)
	PHYPA_008678	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family. (1035 aa)
	PHYPA_007951	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family. (1046 aa)
	RDR6	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family. (1152 aa)
	rpoB	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1085 aa)
	rpl2	50S ribosomal protein L2, chloroplastic; Belongs to the universal ribosomal protein uL2 family. (277 aa)
	ycf2	Protein Ycf2; Probable ATPase of unknown function. Its presence in a non- photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis; Belongs to the Ycf2 family. (2259 aa)
	atp9	ATP synthase subunit 9, mitochondrial; Belongs to the ATPase C chain family. (74 aa)
	rps14	Ribosomal protein S14. (99 aa)
	rpl16	Ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family. (135 aa)
	rps19	Ribosomal protein S19; Belongs to the universal ribosomal protein uS19 family. (93 aa)
	rpl2-2	Ribosomal protein L2. (463 aa)
	nad3	NADH-ubiquinone oxidoreductase chain 3; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. (118 aa)
	nad9	NADH dehydrogenase subunit 9; Belongs to the complex I 30 kDa subunit family. (195 aa)
	nad1	NADH-ubiquinone oxidoreductase chain 1; Belongs to the complex I subunit 1 family. (328 aa)
	cox2	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1. (253 aa)
	nad6	NADH-ubiquinone oxidoreductase chain 6; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. (201 aa)
	atp6	ATP synthase subunit a. (252 aa)
	rps12	Ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family. (126 aa)
	nad7	NADH dehydrogenase subunit 7; Belongs to the complex I 49 kDa subunit family. (393 aa)
	rps14-2	30S ribosomal protein S14, chloroplastic; Binds 16S rRNA, required for the assembly of 30S particles. (100 aa)
	cox1	Cytochrome c oxidase subunit 1; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. (522 aa)
	atp4	ATPase subunit 4. (183 aa)
	ccmB	Cytochrome c biogenesis B. (175 aa)
	ccmC	Putative cytochrome c biosynthesis ccmC-like mitochondrial protein; May be involved in the export of heme to the mitochondrion for the biogenesis of c-type cytochromes. Belongs to the CcmC/CycZ/HelC family. (270 aa)
	nad4L	NADH dehydrogenase subunit 4L. (100 aa)
	sdh3	Succinate dehydrogenase subunit 3. (131 aa)
	ndhJ	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic; NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. (169 aa)
	psbC	Photosystem II CP43 reaction center protein; One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light- induced photochemical processes of PSII. PSII is a light-driven water:plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation; Belongs to the PsbB/PsbC family. PsbC subfamily. (473 aa)
	matK	Maturase K; Usually encoded in the trnK tRNA gene intron. Probably assists in splicing its own and other chloroplast group II introns. Belongs to the intron maturase 2 family. MatK subfamily. (505 aa)
	psbL	Photosystem II reaction center protein L; One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. This subunit is found at the monomer-monomer interface and is required for correct PSII assembly and/or dimerization. (38 aa)
	rps12-2	30S ribosomal protein S12, chloroplastic; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits (By similarity). (123 aa)
	rpl16-2	50S ribosomal protein L16, chloroplastic; Belongs to the universal ribosomal protein uL16 family. (138 aa)
	rps19-2	30S ribosomal protein S19, chloroplastic; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (92 aa)
	nad5	NADH-ubiquinone oxidoreductase chain 5; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. (676 aa)

Your Current Organism:

Physcomitrella patens

NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PHYPA_007951	PHYPA_008678	A0A2K1KKF6	A0A2K1KEU8	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	0.545
PHYPA_007951	PHYPA_029135	A0A2K1KKF6	A0A2K1IGY5	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	0.635
PHYPA_007951	RDR6	A0A2K1KKF6	A0MD71	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	0.656
PHYPA_008678	PHYPA_007951	A0A2K1KEU8	A0A2K1KKF6	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	0.545
PHYPA_008678	PHYPA_029135	A0A2K1KEU8	A0A2K1IGY5	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	0.650
PHYPA_008678	RDR6	A0A2K1KEU8	A0MD71	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	0.672
PHYPA_029135	PHYPA_007951	A0A2K1IGY5	A0A2K1KKF6	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	0.635
PHYPA_029135	PHYPA_008678	A0A2K1IGY5	A0A2K1KEU8	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	0.650
PHYPA_029135	RDR6	A0A2K1IGY5	A0MD71	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	0.663
RDR6	PHYPA_007951	A0MD71	A0A2K1KKF6	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	0.656
RDR6	PHYPA_008678	A0MD71	A0A2K1KEU8	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	0.672
RDR6	PHYPA_029135	A0MD71	A0A2K1IGY5	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	0.663
atp4	atp6	Q1XGD1	Q1XGB1	ATPase subunit 4.	ATP synthase subunit a.	0.926
atp4	atp9	Q1XGD1	Q1XG92	ATPase subunit 4.	ATP synthase subunit 9, mitochondrial; Belongs to the ATPase C chain family.	0.940
atp4	ccmB	Q1XGD1	Q1XGC7	ATPase subunit 4.	Cytochrome c biogenesis B.	0.801
atp4	ccmC	Q1XGD1	Q1XGC6	ATPase subunit 4.	Putative cytochrome c biosynthesis ccmC-like mitochondrial protein; May be involved in the export of heme to the mitochondrion for the biogenesis of c-type cytochromes. Belongs to the CcmC/CycZ/HelC family.	0.815
atp4	cox1	Q1XGD1	Q1XGD3	ATPase subunit 4.	Cytochrome c oxidase subunit 1; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.	0.847
atp4	cox2	Q1XGD1	Q1XGA9	ATPase subunit 4.	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	0.831
atp4	nad1	Q1XGD1	Q1XGA7	ATPase subunit 4.	NADH-ubiquinone oxidoreductase chain 1; Belongs to the complex I subunit 1 family.	0.829
atp4	nad2	Q1XGD1	Q1XGB4	ATPase subunit 4.	NADH dehydrogenase subunit 2.	0.814

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