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ccmB ccmB ccmFN ccmFN nad4L nad4L nad7 nad7 rps2 rps2 ccmC ccmC PHYPA_027319 PHYPA_027319 PHYPA_010923 PHYPA_010923 PHYPA_023601 PHYPA_023601 rpl2 rpl2 atp9 atp9 sdh4 sdh4 rps11 rps11 sdh3 sdh3 nad5 nad5 nad4 nad4 nad2 nad2 atp6 atp6 nad6 nad6 cox2 cox2 nad1 nad1 nad9 nad9 atp1 atp1 nad3 nad3 rpl6 rpl6 rps14 rps14 rpl16 rpl16 rpl2-2 rpl2-2 rps19 rps19 PHYPA_026881 PHYPA_026881 rps14-2 rps14-2 rps8 rps8 rpl16-2 rpl16-2 rps19-2 rps19-2 rps2-2 rps2-2 rps11-2 rps11-2 cox1 cox1 atp4 atp4 atp8 atp8
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ccmBCytochrome c biogenesis B. (175 aa)
ccmFNCytochrome c biogenesis factor N. (607 aa)
nad4LNADH dehydrogenase subunit 4L. (100 aa)
nad7NADH dehydrogenase subunit 7; Belongs to the complex I 49 kDa subunit family. (393 aa)
rps2Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. (241 aa)
ccmCPutative cytochrome c biosynthesis ccmC-like mitochondrial protein; May be involved in the export of heme to the mitochondrion for the biogenesis of c-type cytochromes. Belongs to the CcmC/CycZ/HelC family. (270 aa)
PHYPA_027319Predicted protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain. (111 aa)
PHYPA_010923Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain. (113 aa)
PHYPA_023601Predicted protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain. (113 aa)
rpl250S ribosomal protein L2, chloroplastic; Belongs to the universal ribosomal protein uL2 family. (277 aa)
atp9ATP synthase subunit 9, mitochondrial; Belongs to the ATPase C chain family. (74 aa)
sdh4Succinate dehydrogenase subunit 4. (86 aa)
rps11Ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family. (118 aa)
sdh3Succinate dehydrogenase subunit 3. (131 aa)
nad5NADH-ubiquinone oxidoreductase chain 5; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. (676 aa)
nad4NADH-ubiquinone oxidoreductase chain 4; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. (495 aa)
nad2NADH dehydrogenase subunit 2. (489 aa)
atp6ATP synthase subunit a. (252 aa)
nad6NADH-ubiquinone oxidoreductase chain 6; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. (201 aa)
cox2Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1. (253 aa)
nad1NADH-ubiquinone oxidoreductase chain 1; Belongs to the complex I subunit 1 family. (328 aa)
nad9NADH dehydrogenase subunit 9; Belongs to the complex I 30 kDa subunit family. (195 aa)
atp1ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. (518 aa)
nad3NADH-ubiquinone oxidoreductase chain 3; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. (118 aa)
rpl6Ribosomal protein L6; Belongs to the universal ribosomal protein uL6 family. (101 aa)
rps14Ribosomal protein S14. (99 aa)
rpl16Ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family. (135 aa)
rpl2-2Ribosomal protein L2. (463 aa)
rps19Ribosomal protein S19; Belongs to the universal ribosomal protein uS19 family. (93 aa)
PHYPA_026881Predicted protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain. (113 aa)
rps14-230S ribosomal protein S14, chloroplastic; Binds 16S rRNA, required for the assembly of 30S particles. (100 aa)
rps830S ribosomal protein S8, chloroplastic; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit. (132 aa)
rpl16-250S ribosomal protein L16, chloroplastic; Belongs to the universal ribosomal protein uL16 family. (138 aa)
rps19-230S ribosomal protein S19, chloroplastic; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (92 aa)
rps2-230S ribosomal protein S2, chloroplastic. (236 aa)
rps11-230S ribosomal protein S11, chloroplastic; Belongs to the universal ribosomal protein uS11 family. (130 aa)
cox1Cytochrome c oxidase subunit 1; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. (522 aa)
atp4ATPase subunit 4. (183 aa)
atp8ATPase subunit 8. (174 aa)
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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