50 items (Physcomitrella patens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PHYPA_021109	Uncharacterized protein. (689 aa)
	PHYPA_002380	Uncharacterized protein. (1058 aa)
	PHYPA_002465	Uncharacterized protein. (2522 aa)
	PHYPA_002589	Uncharacterized protein. (1725 aa)
	PHYPA_003453	Uncharacterized protein. (589 aa)
	PHYPA_003683	Uncharacterized protein; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. SET2 subfamily. (847 aa)
	PHYPA_000397	SET domain-containing protein. (442 aa)
	PHYPA_001310	Uncharacterized protein. (2484 aa)
	PHYPA_001568	Uncharacterized protein. (1709 aa)
	PHYPA_001582	Uncharacterized protein. (1075 aa)
	PHYPA_030082	Predicted protein. (311 aa)
	PHYPA_023960	Predicted protein. (458 aa)
	PHYPA_023839	Predicted protein. (490 aa)
	PpCLF	Polycomb group protein. (999 aa)
	PHYPA_005988	Uncharacterized protein. (757 aa)
	PHYPA_006106	Uncharacterized protein. (250 aa)
	PHYPA_006328	SET domain-containing protein. (198 aa)
	PHYPA_006453	SET domain-containing protein. (525 aa)
	PHYPA_006920	Uncharacterized protein; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. SET2 subfamily. (575 aa)
	PHYPA_004422	SET domain-containing protein. (729 aa)
	PHYPA_004565	Uncharacterized protein. (588 aa)
	PHYPA_004866	Uncharacterized protein. (1228 aa)
	PHYPA_005034	SET domain-containing protein. (508 aa)
	PHYPA_005505	Uncharacterized protein. (756 aa)
	PHYPA_007920	Uncharacterized protein. (1832 aa)
	PHYPA_008646	Uncharacterized protein. (1847 aa)
	PHYPA_009998	Uncharacterized protein. (2556 aa)
	PHYPA_011898	SET domain-containing protein. (507 aa)
	PHYPA_011766	Uncharacterized protein. (419 aa)
	PHYPA_029061	Uncharacterized protein. (434 aa)
	PHYPA_029369	Uncharacterized protein. (1603 aa)
	PHYPA_026785	Uncharacterized protein. (513 aa)
	PHYPA_027256	Uncharacterized protein. (1783 aa)
	PHYPA_024780	Uncharacterized protein. (403 aa)
	PHYPA_023943	Uncharacterized protein. (1403 aa)
	PHYPA_022597	SET domain-containing protein. (1021 aa)
	PHYPA_023217	Uncharacterized protein. (425 aa)
	PHYPA_022100	Uncharacterized protein. (1099 aa)
	PHYPA_010952	Uncharacterized protein. (1620 aa)
	PHYPA_012443	Uncharacterized protein. (919 aa)
	PHYPA_015465	SET domain-containing protein. (589 aa)
	PHYPA_015228	Uncharacterized protein. (2527 aa)
	PHYPA_015225	SET domain-containing protein. (635 aa)
	PHYPA_016213	Uncharacterized protein. (718 aa)
	PHYPA_017698	SET domain-containing protein. (483 aa)
	PHYPA_017590	Uncharacterized protein. (1341 aa)
	PHYPA_016974	Uncharacterized protein. (626 aa)
	PHYPA_018751	Uncharacterized protein. (2153 aa)
	PHYPA_019680	SET domain-containing protein. (393 aa)
	PHYPA_021204	Uncharacterized protein. (1124 aa)

Your Current Organism:

Physcomitrella patens

NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PHYPA_001310	PHYPA_001568	A0A2K1LA30	A0A2K1LAV4	Uncharacterized protein.	Uncharacterized protein.	0.451
PHYPA_001310	PHYPA_002589	A0A2K1LA30	A0A2K1L195	Uncharacterized protein.	Uncharacterized protein.	0.451
PHYPA_001310	PpCLF	A0A2K1LA30	C0STZ0	Uncharacterized protein.	Polycomb group protein.	0.414
PHYPA_001568	PHYPA_001310	A0A2K1LAV4	A0A2K1LA30	Uncharacterized protein.	Uncharacterized protein.	0.451
PHYPA_001568	PHYPA_002465	A0A2K1LAV4	A0A2K1L0X1	Uncharacterized protein.	Uncharacterized protein.	0.451
PHYPA_001568	PHYPA_004866	A0A2K1LAV4	A0A2K1KVQ1	Uncharacterized protein.	Uncharacterized protein.	0.546
PHYPA_001568	PHYPA_007920	A0A2K1LAV4	A0A2K1KKF3	Uncharacterized protein.	Uncharacterized protein.	0.521
PHYPA_001568	PHYPA_008646	A0A2K1LAV4	A0A2K1KES0	Uncharacterized protein.	Uncharacterized protein.	0.520
PHYPA_001568	PHYPA_009998	A0A2K1LAV4	A0A2K1KAK6	Uncharacterized protein.	Uncharacterized protein.	0.451
PHYPA_001568	PHYPA_010952	A0A2K1LAV4	A0A2K1K5K0	Uncharacterized protein.	Uncharacterized protein.	0.420
PHYPA_001568	PHYPA_011766	A0A2K1LAV4	A0A2K1K7W1	Uncharacterized protein.	Uncharacterized protein.	0.459
PHYPA_001568	PHYPA_015228	A0A2K1LAV4	A0A2K1JVA0	Uncharacterized protein.	Uncharacterized protein.	0.451
PHYPA_001568	PHYPA_016974	A0A2K1LAV4	A0A2K1JKT2	Uncharacterized protein.	Uncharacterized protein.	0.527
PHYPA_001568	PHYPA_017590	A0A2K1LAV4	A0A2K1JMI0	Uncharacterized protein.	Uncharacterized protein.	0.542
PHYPA_001568	PHYPA_018751	A0A2K1LAV4	A0A2K1JIG9	Uncharacterized protein.	Uncharacterized protein.	0.451
PHYPA_001568	PHYPA_021204	A0A2K1LAV4	A0A2K1J994	Uncharacterized protein.	Uncharacterized protein.	0.537
PHYPA_001568	PHYPA_023839	A0A2K1LAV4	A9THX1	Uncharacterized protein.	Predicted protein.	0.405
PHYPA_001568	PHYPA_027256	A0A2K1LAV4	A0A2K1INU2	Uncharacterized protein.	Uncharacterized protein.	0.415
PHYPA_001568	PHYPA_029061	A0A2K1LAV4	A0A2K1IGR5	Uncharacterized protein.	Uncharacterized protein.	0.459
PHYPA_001568	PHYPA_029369	A0A2K1LAV4	A0A2K1IHL8	Uncharacterized protein.	Uncharacterized protein.	0.451

page 1 of 8

Server load: low (24%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About