(14 nodes) CT11-RanBPM network (Physcomitrella patens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PHYPA_028058	Uncharacterized protein. (233 aa)
	PHYPA_007392	Predicted protein. (385 aa)
	PHYPA_029260	Predicted protein. (418 aa)
	PHYPA_019918	Predicted protein. (216 aa)
	PHYPA_030001	Uncharacterized protein. (466 aa)
	PHYPA_028454	Uncharacterized protein. (229 aa)
	PHYPA_023541	Uncharacterized protein. (429 aa)
	PHYPA_021408	Uncharacterized protein. (467 aa)
	PHYPA_014237	Uncharacterized protein. (233 aa)
	PHYPA_012439	Uncharacterized protein. (215 aa)
	PHYPA_011853	Uncharacterized protein. (418 aa)
	PHYPA_009110	Uncharacterized protein. (385 aa)
	PHYPA_010037	Predicted protein. (386 aa)
	PHYPA_028364	Predicted protein. (384 aa)

Your Current Organism:

Physcomitrella patens

NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PHYPA_007392	PHYPA_009110	A9SBV1	A0A2K1KG41	Predicted protein.	Uncharacterized protein.	0.544
PHYPA_007392	PHYPA_010037	A9SBV1	A9S273	Predicted protein.	Predicted protein.	0.554
PHYPA_007392	PHYPA_011853	A9SBV1	A0A2K1K851	Predicted protein.	Uncharacterized protein.	0.929
PHYPA_007392	PHYPA_012439	A9SBV1	A0A2K1K2G2	Predicted protein.	Uncharacterized protein.	0.632
PHYPA_007392	PHYPA_014237	A9SBV1	A0A2K1K010	Predicted protein.	Uncharacterized protein.	0.632
PHYPA_007392	PHYPA_019918	A9SBV1	A9TCX9	Predicted protein.	Predicted protein.	0.632
PHYPA_007392	PHYPA_021408	A9SBV1	A0A2K1J9V5	Predicted protein.	Uncharacterized protein.	0.729
PHYPA_007392	PHYPA_023541	A9SBV1	A0A2K1IWS9	Predicted protein.	Uncharacterized protein.	0.779
PHYPA_007392	PHYPA_028058	A9SBV1	A0A2K1IJB5	Predicted protein.	Uncharacterized protein.	0.632
PHYPA_007392	PHYPA_028364	A9SBV1	A9S551	Predicted protein.	Predicted protein.	0.545
PHYPA_007392	PHYPA_028454	A9SBV1	A0A2K1IF08	Predicted protein.	Uncharacterized protein.	0.632
PHYPA_007392	PHYPA_029260	A9SBV1	A9SPN7	Predicted protein.	Predicted protein.	0.929
PHYPA_007392	PHYPA_030001	A9SBV1	A0A2K1IEZ4	Predicted protein.	Uncharacterized protein.	0.729
PHYPA_009110	PHYPA_007392	A0A2K1KG41	A9SBV1	Uncharacterized protein.	Predicted protein.	0.544
PHYPA_009110	PHYPA_010037	A0A2K1KG41	A9S273	Uncharacterized protein.	Predicted protein.	0.554
PHYPA_009110	PHYPA_011853	A0A2K1KG41	A0A2K1K851	Uncharacterized protein.	Uncharacterized protein.	0.928
PHYPA_009110	PHYPA_012439	A0A2K1KG41	A0A2K1K2G2	Uncharacterized protein.	Uncharacterized protein.	0.632
PHYPA_009110	PHYPA_014237	A0A2K1KG41	A0A2K1K010	Uncharacterized protein.	Uncharacterized protein.	0.632
PHYPA_009110	PHYPA_019918	A0A2K1KG41	A9TCX9	Uncharacterized protein.	Predicted protein.	0.632
PHYPA_009110	PHYPA_021408	A0A2K1KG41	A0A2K1J9V5	Uncharacterized protein.	Uncharacterized protein.	0.729

page 1 of 8

Server load: low (14%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About