(27 nodes) Protein transmembrane transport, and AAA+ ATPase ClpV1 network (Azotobacter vinelandii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ACO78836.1	Rhs element Vgr protein. (687 aa)
	ACO78837.1	ClpA/B-type protease; Belongs to the ClpA/ClpB family. (886 aa)
	ACO78838.1	Conserved hypothetical protein. (337 aa)
	ACO78839.1	Conserved hypothetical protein. (620 aa)
	ACO78840.1	Conserved hypothetical protein. (180 aa)
	ACO78841.1	Conserved hypothetical protein. (160 aa)
	ACO78842.1	Conserved hypothetical protein. (500 aa)
	ACO78843.1	Conserved hypothetical protein (UCP028301). (188 aa)
	ACO78844.1	ImpA domain-containing protein. (344 aa)
	ACO78846.1	Conserved hypothetical protein. (232 aa)
	ACO78847.1	Conserved hypothetical protein. (1205 aa)
	ACO78848.1	OmpA/MotB domain protein. (430 aa)
	ACO78849.1	Conserved hypothetical protein. (455 aa)
	ACO78850.1	Conserved hypothetical protein. (192 aa)
	ACO81162.1	ImpA-related protein. (363 aa)
	ACO81163.1	Conserved hypothetical protein. (1272 aa)
	ACO81164.1	Conserved hypothetical protein. (254 aa)
	ACO81165.1	Conserved hypothetical protein. (441 aa)
	ACO81166.1	Conserved hypothetical protein. (165 aa)
	ACO81167.1	Conserved hypothetical protein. (187 aa)
	ACO81168.1	DUF877 family protein. (493 aa)
	ACO81169.1	DUF796 family protein. (165 aa)
	ACO81170.1	Conserved hypothetical protein. (150 aa)
	ACO81171.1	Conserved hypothetical protein. (597 aa)
	ACO81172.1	Conserved hypothetical protein. (340 aa)
	ACO81173.1	AAA ATPase; Belongs to the ClpA/ClpB family. (842 aa)
	ACO81174.1	Rhs element Vgr protein. (668 aa)

Your Current Organism:

Azotobacter vinelandii

NCBI taxonomy Id: 322710
Other names: A. vinelandii DJ, Azotobacter vinelandii DJ, Azotobacter vinelandii str. DJ, Azotobacter vinelandii strain DJ

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACO78836.1	ACO78837.1	Avin_26600	Avin_26610	Rhs element Vgr protein.	ClpA/B-type protease; Belongs to the ClpA/ClpB family.	0.965
ACO78836.1	ACO78838.1	Avin_26600	Avin_26620	Rhs element Vgr protein.	Conserved hypothetical protein.	0.976
ACO78836.1	ACO78839.1	Avin_26600	Avin_26630	Rhs element Vgr protein.	Conserved hypothetical protein.	0.950
ACO78836.1	ACO78840.1	Avin_26600	Avin_26640	Rhs element Vgr protein.	Conserved hypothetical protein.	0.959
ACO78836.1	ACO78841.1	Avin_26600	Avin_26650	Rhs element Vgr protein.	Conserved hypothetical protein.	0.951
ACO78836.1	ACO78842.1	Avin_26600	Avin_26660	Rhs element Vgr protein.	Conserved hypothetical protein.	0.914
ACO78836.1	ACO78843.1	Avin_26600	Avin_26670	Rhs element Vgr protein.	Conserved hypothetical protein (UCP028301).	0.941
ACO78836.1	ACO78844.1	Avin_26600	Avin_26680	Rhs element Vgr protein.	ImpA domain-containing protein.	0.931
ACO78836.1	ACO78846.1	Avin_26600	Avin_26700	Rhs element Vgr protein.	Conserved hypothetical protein.	0.866
ACO78836.1	ACO78847.1	Avin_26600	Avin_26710	Rhs element Vgr protein.	Conserved hypothetical protein.	0.864
ACO78836.1	ACO78848.1	Avin_26600	Avin_26720	Rhs element Vgr protein.	OmpA/MotB domain protein.	0.969
ACO78836.1	ACO78849.1	Avin_26600	Avin_26730	Rhs element Vgr protein.	Conserved hypothetical protein.	0.878
ACO78836.1	ACO78850.1	Avin_26600	Avin_26740	Rhs element Vgr protein.	Conserved hypothetical protein.	0.902
ACO78836.1	ACO81162.1	Avin_26600	Avin_50750	Rhs element Vgr protein.	ImpA-related protein.	0.905
ACO78836.1	ACO81163.1	Avin_26600	Avin_50760	Rhs element Vgr protein.	Conserved hypothetical protein.	0.804
ACO78836.1	ACO81164.1	Avin_26600	Avin_50770	Rhs element Vgr protein.	Conserved hypothetical protein.	0.836
ACO78836.1	ACO81165.1	Avin_26600	Avin_50780	Rhs element Vgr protein.	Conserved hypothetical protein.	0.832
ACO78836.1	ACO81166.1	Avin_26600	Avin_50790	Rhs element Vgr protein.	Conserved hypothetical protein.	0.464
ACO78836.1	ACO81167.1	Avin_26600	Avin_50800	Rhs element Vgr protein.	Conserved hypothetical protein.	0.910
ACO78836.1	ACO81168.1	Avin_26600	Avin_50810	Rhs element Vgr protein.	DUF877 family protein.	0.865