(19 nodes) Cytochrome c-like domain network (Nitrobacter hamburgensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Nham_0377	Cytochrome c, class I. (184 aa)
	Nham_2708	Conserved hypothetical protein. (595 aa)
	Nham_1443	Cytochrome c, class I. (149 aa)
	Nham_3205	Cytochrome c, class I. (133 aa)
	Nham_3240	Cytochrome c1; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (688 aa)
	Nham_3282	Cytochrome c, class IC. (118 aa)
	Nham_3283	Cytochrome c, class I. (225 aa)
	Nham_3450	Cytochrome c, class I. (326 aa)
	Nham_3474	Cytochrome c, class I. (186 aa)
	Nham_3673	Diheme cytochrome SoxA (sulfur oxidation). (286 aa)
	Nham_3676	Monoheme cytochrome SoxX (sulfur oxidation). (123 aa)
	Nham_1925	Hypothetical protein. (108 aa)
	Nham_1945	Hypothetical protein. (111 aa)
	Nham_0990	Cytochrome c, class I; Electron acceptor for MDH. Acts in methanol oxidation. (159 aa)
	Nham_1183	Cytochrome c, class I. (420 aa)
	Nham_0194	Cytochrome c, class I. (220 aa)
	Nham_0193	Cytochrome c, class I. (327 aa)
	Nham_1094	Cytochrome c, class I. (188 aa)
	ctaG	Cytochrome c oxidase assembly protein CtaG/Cox11; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I; Belongs to the COX11/CtaG family. (308 aa)

Your Current Organism:

Nitrobacter hamburgensis

NCBI taxonomy Id: 323097
Other names: N. hamburgensis X14, Nitrobacter hamburgensis X14, Nitrobacter hamburgensis str. X14, Nitrobacter hamburgensis strain X14

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Nham_0193	Nham_0194	Nham_0193	Nham_0194	Cytochrome c, class I.	Cytochrome c, class I.	0.967
Nham_0193	Nham_1183	Nham_0193	Nham_1183	Cytochrome c, class I.	Cytochrome c, class I.	0.704
Nham_0193	Nham_3676	Nham_0193	Nham_3676	Cytochrome c, class I.	Monoheme cytochrome SoxX (sulfur oxidation).	0.449
Nham_0194	Nham_0193	Nham_0194	Nham_0193	Cytochrome c, class I.	Cytochrome c, class I.	0.967
Nham_0194	Nham_1183	Nham_0194	Nham_1183	Cytochrome c, class I.	Cytochrome c, class I.	0.436
Nham_0194	Nham_3240	Nham_0194	Nham_3240	Cytochrome c, class I.	Cytochrome c1; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.540
Nham_0377	Nham_3240	Nham_0377	Nham_3240	Cytochrome c, class I.	Cytochrome c1; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.898
Nham_0377	ctaG	Nham_0377	Nham_0651	Cytochrome c, class I.	Cytochrome c oxidase assembly protein CtaG/Cox11; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I; Belongs to the COX11/CtaG family.	0.419
Nham_0990	Nham_1094	Nham_0990	Nham_1094	Cytochrome c, class I; Electron acceptor for MDH. Acts in methanol oxidation.	Cytochrome c, class I.	0.418
Nham_0990	Nham_3240	Nham_0990	Nham_3240	Cytochrome c, class I; Electron acceptor for MDH. Acts in methanol oxidation.	Cytochrome c1; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.445
Nham_0990	ctaG	Nham_0990	Nham_0651	Cytochrome c, class I; Electron acceptor for MDH. Acts in methanol oxidation.	Cytochrome c oxidase assembly protein CtaG/Cox11; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I; Belongs to the COX11/CtaG family.	0.405
Nham_1094	Nham_0990	Nham_1094	Nham_0990	Cytochrome c, class I.	Cytochrome c, class I; Electron acceptor for MDH. Acts in methanol oxidation.	0.418
Nham_1094	Nham_1925	Nham_1094	Nham_1925	Cytochrome c, class I.	Hypothetical protein.	0.487
Nham_1094	Nham_3205	Nham_1094	Nham_3205	Cytochrome c, class I.	Cytochrome c, class I.	0.900
Nham_1094	Nham_3673	Nham_1094	Nham_3673	Cytochrome c, class I.	Diheme cytochrome SoxA (sulfur oxidation).	0.966
Nham_1094	Nham_3676	Nham_1094	Nham_3676	Cytochrome c, class I.	Monoheme cytochrome SoxX (sulfur oxidation).	0.944
Nham_1183	Nham_0193	Nham_1183	Nham_0193	Cytochrome c, class I.	Cytochrome c, class I.	0.704
Nham_1183	Nham_0194	Nham_1183	Nham_0194	Cytochrome c, class I.	Cytochrome c, class I.	0.436
Nham_1183	Nham_3240	Nham_1183	Nham_3240	Cytochrome c, class I.	Cytochrome c1; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.445
Nham_1183	ctaG	Nham_1183	Nham_0651	Cytochrome c, class I.	Cytochrome c oxidase assembly protein CtaG/Cox11; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I; Belongs to the COX11/CtaG family.	0.405