STRINGSTRING
Noc_0787 Noc_0787 Noc_0788 Noc_0788 pcm1 pcm1 Noc_0791 Noc_0791 Noc_0792 Noc_0792 recO recO pdxJ pdxJ acpS acpS Noc_0798 Noc_0798 Noc_0799 Noc_0799 Noc_0800 Noc_0800 rlmD rlmD Noc_2253 Noc_2253 Noc_2254 Noc_2254 xerD xerD Noc_2256 Noc_2256 Noc_2262 Noc_2262 Noc_2263 Noc_2263 Noc_2264 Noc_2264 Noc_2265 Noc_2265 Noc_2266 Noc_2266 Noc_2267 Noc_2267 Noc_2268 Noc_2268 Noc_2278 Noc_2278 sfsA sfsA dsbB dsbB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Noc_0787Peptidase S8 and S53, subtilisin, kexin, sedolisin; Belongs to the peptidase S8 family. (612 aa)
Noc_0788Hypothetical protein. (111 aa)
pcm1Protein-L-isoaspartate(D-aspartate) O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. (213 aa)
Noc_0791Conserved hypothetical protein. (193 aa)
Noc_0792Peptidase M23B. (257 aa)
recODNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination. (246 aa)
pdxJPyridoxine 5'-phosphate synthase; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate. (246 aa)
acpSHolo-acyl carrier protein synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family. (154 aa)
Noc_0798Hypothetical protein. (678 aa)
Noc_0799Hypothetical protein. (211 aa)
Noc_0800Conserved hypothetical protein. (257 aa)
rlmD23S rRNA m(5)U-1939 methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. (447 aa)
Noc_2253Thiol-disulfide interchange protein DsbC; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. (245 aa)
Noc_2254Protein of unknown function DUF520; Belongs to the UPF0234 family. (160 aa)
xerDTyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (305 aa)
Noc_2256Methylated-DNA-(protein)-cysteine S-methyltransferase. (158 aa)
Noc_2262Cytochrome c assembly protein. (282 aa)
Noc_2263Conserved hypothetical protein. (440 aa)
Noc_2264Hypothetical protein. (359 aa)
Noc_2265Conserved hypothetical protein, AsmA. (812 aa)
Noc_2266Hypothetical protein. (172 aa)
Noc_2267A/G-specific DNA-adenine glycosylase; Adenine glycosylase active on G-A mispairs. (354 aa)
Noc_2268Fe(II) trafficking protein YggX; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes. (90 aa)
Noc_2278Hypothetical protein. (167 aa)
sfsASugar fermentation stimulation protein; Belongs to the SfsA family. (235 aa)
dsbBDisulfide bond formation protein DsbB; Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein; Belongs to the DsbB family. (169 aa)
Your Current Organism:
Nitrosococcus oceani
NCBI taxonomy Id: 323261
Other names: N. oceani ATCC 19707, Nitrosococcus oceani ATCC 19707, Nitrosococcus oceani C-107, Nitrosococcus oceani NCIMB 11848, Nitrosococcus oceani str. ATCC 19707, Nitrosococcus oceani strain ATCC 19707
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