Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Shew_0563 | Shew_0568 | Shew_0563 | Shew_0568 | N-acetylmuramoyl-L-alanine amidase; PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: she:Shewmr4_0595 N-acetylmuramoyl-L-alanine amidase. | HflK protein; HflC and HflK could encode or regulate a protease. | 0.513 |
| Shew_0563 | Shew_0569 | Shew_0563 | Shew_0569 | N-acetylmuramoyl-L-alanine amidase; PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: she:Shewmr4_0595 N-acetylmuramoyl-L-alanine amidase. | HflC protein; HflC and HflK could regulate a protease. | 0.491 |
| Shew_0563 | Shew_2455 | Shew_0563 | Shew_2455 | N-acetylmuramoyl-L-alanine amidase; PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: she:Shewmr4_0595 N-acetylmuramoyl-L-alanine amidase. | PFAM: peptidase M23B; Opacity-associated protein A; Opacity-associated protein A, N-terminal domain protein; KEGG: shm:Shewmr7_2518 peptidase M23B. | 0.625 |
| Shew_0563 | hflX | Shew_0563 | Shew_0567 | N-acetylmuramoyl-L-alanine amidase; PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: she:Shewmr4_0595 N-acetylmuramoyl-L-alanine amidase. | GTP-binding protein, HSR1-related; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | 0.649 |
| Shew_0563 | hfq | Shew_0563 | Shew_0566 | N-acetylmuramoyl-L-alanine amidase; PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: she:Shewmr4_0595 N-acetylmuramoyl-L-alanine amidase. | RNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.670 |
| Shew_0563 | miaA | Shew_0563 | Shew_0565 | N-acetylmuramoyl-L-alanine amidase; PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: she:Shewmr4_0595 N-acetylmuramoyl-L-alanine amidase. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.893 |
| Shew_0568 | Shew_0563 | Shew_0568 | Shew_0563 | HflK protein; HflC and HflK could encode or regulate a protease. | N-acetylmuramoyl-L-alanine amidase; PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: she:Shewmr4_0595 N-acetylmuramoyl-L-alanine amidase. | 0.513 |
| Shew_0568 | Shew_0569 | Shew_0568 | Shew_0569 | HflK protein; HflC and HflK could encode or regulate a protease. | HflC protein; HflC and HflK could regulate a protease. | 0.991 |
| Shew_0568 | Shew_0978 | Shew_0568 | Shew_0978 | HflK protein; HflC and HflK could encode or regulate a protease. | PFAM: band 7 protein; KEGG: ecp:ECP_2928 putative SPFH domain protein. | 0.934 |
| Shew_0568 | Shew_1785 | Shew_0568 | Shew_1785 | HflK protein; HflC and HflK could encode or regulate a protease. | PFAM: band 7 protein; KEGG: sdn:Sden_2191 band 7 protein. | 0.533 |
| Shew_0568 | Shew_3386 | Shew_0568 | Shew_3386 | HflK protein; HflC and HflK could encode or regulate a protease. | PFAM: band 7 protein; KEGG: son:SO4128 SPFH domain/Band 7 family protein. | 0.646 |
| Shew_0568 | Shew_3387 | Shew_0568 | Shew_3387 | HflK protein; HflC and HflK could encode or regulate a protease. | PFAM: band 7 protein; KEGG: son:SO4129 SPFH domain/Band 7 family protein. | 0.648 |
| Shew_0568 | ftsH | Shew_0568 | Shew_2834 | HflK protein; HflC and HflK could encode or regulate a protease. | Membrane protease FtsH catalytic subunit; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. | 0.959 |
| Shew_0568 | hflX | Shew_0568 | Shew_0567 | HflK protein; HflC and HflK could encode or regulate a protease. | GTP-binding protein, HSR1-related; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | 0.914 |
| Shew_0568 | hfq | Shew_0568 | Shew_0566 | HflK protein; HflC and HflK could encode or regulate a protease. | RNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.666 |
| Shew_0568 | htpX | Shew_0568 | Shew_1723 | HflK protein; HflC and HflK could encode or regulate a protease. | HtpX-2 peptidase. Metallo peptidase. MEROPS family M48B; PFAM: peptidase M48, Ste24p; HtpX domain protein; KEGG: shm:Shewmr7_2423 HtpX domain protein; Belongs to the peptidase M48B family. | 0.416 |
| Shew_0568 | miaA | Shew_0568 | Shew_0565 | HflK protein; HflC and HflK could encode or regulate a protease. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.657 |
| Shew_0569 | Shew_0563 | Shew_0569 | Shew_0563 | HflC protein; HflC and HflK could regulate a protease. | N-acetylmuramoyl-L-alanine amidase; PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: she:Shewmr4_0595 N-acetylmuramoyl-L-alanine amidase. | 0.491 |
| Shew_0569 | Shew_0568 | Shew_0569 | Shew_0568 | HflC protein; HflC and HflK could regulate a protease. | HflK protein; HflC and HflK could encode or regulate a protease. | 0.991 |
| Shew_0569 | Shew_3386 | Shew_0569 | Shew_3386 | HflC protein; HflC and HflK could regulate a protease. | PFAM: band 7 protein; KEGG: son:SO4128 SPFH domain/Band 7 family protein. | 0.747 |
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