(5 nodes) Mind bomb, SH3 repeat domain, and Ubiquitin conserved site network (Xiphophorus couchianus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Mib2	Mindbomb E3 ubiquitin protein ligase 2. (926 aa)
	LOC114138068	Ribosomal protein S27a. (156 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	Zfand4	Zinc finger, AN1-type domain 4. (640 aa)
	Traf7	TNF receptor-associated factor 7. (654 aa)

Your Current Organism:

Xiphophorus couchianus

NCBI taxonomy Id: 32473
Other names: Limia couchiana, Monterrey platyfish, X. couchianus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC114138068	Mib2	ENSXCOP00000004814	ENSXCOP00000002876	Ribosomal protein S27a.	Mindbomb E3 ubiquitin protein ligase 2.	0.995
LOC114138068	Traf7	ENSXCOP00000004814	ENSXCOP00000020562	Ribosomal protein S27a.	TNF receptor-associated factor 7.	0.910
LOC114138068	Zfand4	ENSXCOP00000004814	ENSXCOP00000016326	Ribosomal protein S27a.	Zinc finger, AN1-type domain 4.	0.999
LOC114138068	uba52	ENSXCOP00000004814	ENSXCOP00000007438	Ribosomal protein S27a.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.999
Mib2	LOC114138068	ENSXCOP00000002876	ENSXCOP00000004814	Mindbomb E3 ubiquitin protein ligase 2.	Ribosomal protein S27a.	0.995
Mib2	Traf7	ENSXCOP00000002876	ENSXCOP00000020562	Mindbomb E3 ubiquitin protein ligase 2.	TNF receptor-associated factor 7.	0.935
Mib2	Zfand4	ENSXCOP00000002876	ENSXCOP00000016326	Mindbomb E3 ubiquitin protein ligase 2.	Zinc finger, AN1-type domain 4.	0.872
Mib2	uba52	ENSXCOP00000002876	ENSXCOP00000007438	Mindbomb E3 ubiquitin protein ligase 2.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.988
Traf7	LOC114138068	ENSXCOP00000020562	ENSXCOP00000004814	TNF receptor-associated factor 7.	Ribosomal protein S27a.	0.910
Traf7	Mib2	ENSXCOP00000020562	ENSXCOP00000002876	TNF receptor-associated factor 7.	Mindbomb E3 ubiquitin protein ligase 2.	0.935
Traf7	Zfand4	ENSXCOP00000020562	ENSXCOP00000016326	TNF receptor-associated factor 7.	Zinc finger, AN1-type domain 4.	0.949
Traf7	uba52	ENSXCOP00000020562	ENSXCOP00000007438	TNF receptor-associated factor 7.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.955
Zfand4	LOC114138068	ENSXCOP00000016326	ENSXCOP00000004814	Zinc finger, AN1-type domain 4.	Ribosomal protein S27a.	0.999
Zfand4	Mib2	ENSXCOP00000016326	ENSXCOP00000002876	Zinc finger, AN1-type domain 4.	Mindbomb E3 ubiquitin protein ligase 2.	0.872
Zfand4	Traf7	ENSXCOP00000016326	ENSXCOP00000020562	Zinc finger, AN1-type domain 4.	TNF receptor-associated factor 7.	0.949
Zfand4	uba52	ENSXCOP00000016326	ENSXCOP00000007438	Zinc finger, AN1-type domain 4.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.997
uba52	LOC114138068	ENSXCOP00000007438	ENSXCOP00000004814	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ribosomal protein S27a.	0.999
uba52	Mib2	ENSXCOP00000007438	ENSXCOP00000002876	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Mindbomb E3 ubiquitin protein ligase 2.	0.988
uba52	Traf7	ENSXCOP00000007438	ENSXCOP00000020562	Ubiquitin A-52 residue ribosomal protein fusion product 1.	TNF receptor-associated factor 7.	0.955
uba52	Zfand4	ENSXCOP00000007438	ENSXCOP00000016326	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Zinc finger, AN1-type domain 4.	0.997