STRINGSTRING
LOC114156812 LOC114156812 Lrr1 Lrr1 COPS6 COPS6 ELOB ELOB UBE2M UBE2M Cul4a Cul4a ENSXCOP00000002552 ENSXCOP00000002552 Dtl Dtl Dcun1d2 Dcun1d2 Nae1 Nae1 dcun1d3 dcun1d3 Dcaf5 Dcaf5 ENSXCOP00000005581 ENSXCOP00000005581 ENSXCOP00000006170 ENSXCOP00000006170 fem1c fem1c Ercc8 Ercc8 ENSXCOP00000009752 ENSXCOP00000009752 Dcaf4 Dcaf4 NEDD8 NEDD8 ENSXCOP00000011415 ENSXCOP00000011415 Ppp1r42 Ppp1r42 Cops5 Cops5 Ercc6 Ercc6 ENSXCOP00000014358 ENSXCOP00000014358 LOC114133652 LOC114133652 ENSXCOP00000016620 ENSXCOP00000016620 rnf7 rnf7 UBA3 UBA3 Ddb1 Ddb1 rbx1 rbx1 ENSXCOP00000019315 ENSXCOP00000019315 Wdtc1 Wdtc1 ENSXCOP00000021615 ENSXCOP00000021615 ENSXCOP00000022149 ENSXCOP00000022149 ENSXCOP00000023000 ENSXCOP00000023000 ENSXCOP00000023626 ENSXCOP00000023626 ENSXCOP00000024151 ENSXCOP00000024151 Senp8 Senp8 Cops2 Cops2 Cul5 Cul5 ENSXCOP00000025259 ENSXCOP00000025259 ENSXCOP00000025281 ENSXCOP00000025281 Dcaf8 Dcaf8 cops7a cops7a fem1b fem1b vhl vhl
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC114156812Ubiquitin-like domain-containing protein. (83 aa)
Lrr1Zgc:77287. (422 aa)
COPS6COP9 signalosome subunit 6. (297 aa)
ELOBElongin B. (126 aa)
UBE2MUbiquitin conjugating enzyme E2 M; Belongs to the ubiquitin-conjugating enzyme family. (172 aa)
Cul4aCullin 4A; Belongs to the cullin family. (753 aa)
ENSXCOP00000002552COP9 signalosome subunit 3. (345 aa)
DtlDenticleless E3 ubiquitin protein ligase homolog (Drosophila). (735 aa)
Dcun1d2DCN1-like protein. (259 aa)
Nae1NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric UBA3-NAE1 E1 enzyme. E1 activates NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-UBA3 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of UBE2M. Belongs to the ubiquitin-activating E1 family. ULA1 subfamily. (509 aa)
dcun1d3DCN1-like protein. (318 aa)
Dcaf5Ddb1 and cul4 associated factor 5. (782 aa)
ENSXCOP00000005581WD repeat domain 32. (377 aa)
ENSXCOP00000006170Cullin 2; Belongs to the cullin family. (706 aa)
fem1cFem-1 homolog c (C. elegans). (617 aa)
Ercc8Excision repair cross-complementation group 8. (386 aa)
ENSXCOP00000009752DCN1-like protein. (256 aa)
Dcaf4WD repeat domain 21. (301 aa)
NEDD8NEDD8 ubiquitin like modifier. (79 aa)
ENSXCOP00000011415DCN1-like protein. (255 aa)
Ppp1r42Protein phosphatase 1, regulatory subunit 42. (301 aa)
Cops5COP9 signalosome subunit 5. (336 aa)
Ercc6Excision repair cross-complementation group 6. (1356 aa)
ENSXCOP00000014358G protein pathway suppressor 1. (459 aa)
LOC114133652DCN1-like protein. (249 aa)
ENSXCOP00000016620WD repeat-containing protein 76; Specifically binds 5-hydroxymethylcytosine (5hmC), suggesting that it acts as a specific reader of 5hmC. Belongs to the WD repeat DDB2/WDR76 family. (365 aa)
rnf7Ring finger protein 7. (110 aa)
UBA3Ubiquitin like modifier activating enzyme 3. (444 aa)
Ddb1Damage-specific DNA binding protein 1. (981 aa)
rbx1Ring-box 1, E3 ubiquitin protein ligase. (149 aa)
ENSXCOP00000019315Ubiquitin-conjugating enzyme E2F (putative); Belongs to the ubiquitin-conjugating enzyme family. (180 aa)
Wdtc1WD and tetratricopeptide repeats 1. (667 aa)
ENSXCOP00000021615COP9 signalosome subunit 8. (214 aa)
ENSXCOP00000022149Cullin 4B; Belongs to the cullin family. (831 aa)
ENSXCOP00000023000Ubiquitin-like modifier activating enzyme 3. (426 aa)
ENSXCOP00000023626COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis). (349 aa)
ENSXCOP00000024151Elongin B. (117 aa)
Senp8SUMO peptidase family member, NEDD8 specific. (222 aa)
Cops2COP9 signalosome subunit 2. (434 aa)
Cul5Cullin 5a; Belongs to the cullin family. (662 aa)
ENSXCOP00000025259DCN1-like protein. (272 aa)
ENSXCOP00000025281Ddb1 and cul4 associated factor 6. (465 aa)
Dcaf8DDB1 and CUL4 associated factor 8. (603 aa)
cops7aCOP9 constitutive photomorphogenic homolog subunit 7A. (268 aa)
fem1bFem-1 homolog b (C. elegans). (627 aa)
vhlVon Hippel-Lindau tumor suppressor. (164 aa)
Your Current Organism:
Xiphophorus couchianus
NCBI taxonomy Id: 32473
Other names: Limia couchiana, Monterrey platyfish, X. couchianus
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