7 items (Xiphophorus couchianus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSXCOP00000010777	Si:ch211-198n5.11. (463 aa)
	ENSXCOP00000009908	Isovaleryl-CoA dehydrogenase. (405 aa)
	Mccc2	Methylcrotonoyl-CoA carboxylase 2 (beta). (543 aa)
	Hmgcll1	3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1. (295 aa)
	Hmgcl	3-hydroxy-3-methylglutaryl-CoA lyase. (280 aa)
	ENSXCOP00000020198	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. (380 aa)
	LOC114159726	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. (399 aa)

Your Current Organism:

Xiphophorus couchianus

NCBI taxonomy Id: 32473
Other names: Limia couchiana, Monterrey platyfish, X. couchianus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSXCOP00000009908	ENSXCOP00000010777	ENSXCOP00000009908	ENSXCOP00000010777	Isovaleryl-CoA dehydrogenase.	Si:ch211-198n5.11.	0.793
ENSXCOP00000009908	Hmgcl	ENSXCOP00000009908	ENSXCOP00000017518	Isovaleryl-CoA dehydrogenase.	3-hydroxy-3-methylglutaryl-CoA lyase.	0.455
ENSXCOP00000009908	Hmgcll1	ENSXCOP00000009908	ENSXCOP00000015734	Isovaleryl-CoA dehydrogenase.	3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1.	0.455
ENSXCOP00000009908	Mccc2	ENSXCOP00000009908	ENSXCOP00000012514	Isovaleryl-CoA dehydrogenase.	Methylcrotonoyl-CoA carboxylase 2 (beta).	0.794
ENSXCOP00000010777	ENSXCOP00000009908	ENSXCOP00000010777	ENSXCOP00000009908	Si:ch211-198n5.11.	Isovaleryl-CoA dehydrogenase.	0.793
ENSXCOP00000010777	Hmgcl	ENSXCOP00000010777	ENSXCOP00000017518	Si:ch211-198n5.11.	3-hydroxy-3-methylglutaryl-CoA lyase.	0.832
ENSXCOP00000010777	Hmgcll1	ENSXCOP00000010777	ENSXCOP00000015734	Si:ch211-198n5.11.	3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1.	0.832
ENSXCOP00000020198	Hmgcl	ENSXCOP00000020198	ENSXCOP00000017518	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	3-hydroxy-3-methylglutaryl-CoA lyase.	0.848
ENSXCOP00000020198	Hmgcll1	ENSXCOP00000020198	ENSXCOP00000015734	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1.	0.848
ENSXCOP00000020198	LOC114159726	ENSXCOP00000020198	ENSXCOP00000024277	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	0.903
Hmgcl	ENSXCOP00000009908	ENSXCOP00000017518	ENSXCOP00000009908	3-hydroxy-3-methylglutaryl-CoA lyase.	Isovaleryl-CoA dehydrogenase.	0.455
Hmgcl	ENSXCOP00000010777	ENSXCOP00000017518	ENSXCOP00000010777	3-hydroxy-3-methylglutaryl-CoA lyase.	Si:ch211-198n5.11.	0.832
Hmgcl	ENSXCOP00000020198	ENSXCOP00000017518	ENSXCOP00000020198	3-hydroxy-3-methylglutaryl-CoA lyase.	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	0.848
Hmgcl	Hmgcll1	ENSXCOP00000017518	ENSXCOP00000015734	3-hydroxy-3-methylglutaryl-CoA lyase.	3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1.	0.901
Hmgcl	LOC114159726	ENSXCOP00000017518	ENSXCOP00000024277	3-hydroxy-3-methylglutaryl-CoA lyase.	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	0.848
Hmgcl	Mccc2	ENSXCOP00000017518	ENSXCOP00000012514	3-hydroxy-3-methylglutaryl-CoA lyase.	Methylcrotonoyl-CoA carboxylase 2 (beta).	0.837
Hmgcll1	ENSXCOP00000009908	ENSXCOP00000015734	ENSXCOP00000009908	3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1.	Isovaleryl-CoA dehydrogenase.	0.455
Hmgcll1	ENSXCOP00000010777	ENSXCOP00000015734	ENSXCOP00000010777	3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1.	Si:ch211-198n5.11.	0.832
Hmgcll1	ENSXCOP00000020198	ENSXCOP00000015734	ENSXCOP00000020198	3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1.	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	0.848
Hmgcll1	Hmgcl	ENSXCOP00000015734	ENSXCOP00000017518	3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1.	3-hydroxy-3-methylglutaryl-CoA lyase.	0.901