(12 nodes) RNA polymerase I complex network (Xiphophorus couchianus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	polr2h	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
	znrd1	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (118 aa)
	ENSXCOP00000018198	RNA polymerase I subunit E. (402 aa)
	Polr1c	RNA polymerase I and III subunit C. (348 aa)
	ENSXCOP00000026847	Uncharacterized protein. (66 aa)
	twistnb	TWIST neighbor. (357 aa)
	ENSXCOP00000017763	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (743 aa)
	ENSXCOP00000015512	RNA polymerase I and III subunit D. (130 aa)
	Cd3eap	CD3e molecule, epsilon associated protein. (297 aa)
	POLR2E	RNA polymerase II subunit E. (183 aa)
	ENSXCOP00000009342	Uncharacterized protein. (517 aa)
	polr1b	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1132 aa)

Your Current Organism:

Xiphophorus couchianus

NCBI taxonomy Id: 32473
Other names: Limia couchiana, Monterrey platyfish, X. couchianus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cd3eap	ENSXCOP00000009342	ENSXCOP00000012867	ENSXCOP00000009342	CD3e molecule, epsilon associated protein.	Uncharacterized protein.	0.965
Cd3eap	ENSXCOP00000015512	ENSXCOP00000012867	ENSXCOP00000015512	CD3e molecule, epsilon associated protein.	RNA polymerase I and III subunit D.	0.998
Cd3eap	ENSXCOP00000017763	ENSXCOP00000012867	ENSXCOP00000017763	CD3e molecule, epsilon associated protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.965
Cd3eap	ENSXCOP00000018198	ENSXCOP00000012867	ENSXCOP00000018198	CD3e molecule, epsilon associated protein.	RNA polymerase I subunit E.	0.999
Cd3eap	ENSXCOP00000026847	ENSXCOP00000012867	ENSXCOP00000026847	CD3e molecule, epsilon associated protein.	Uncharacterized protein.	0.981
Cd3eap	POLR2E	ENSXCOP00000012867	ENSXCOP00000012157	CD3e molecule, epsilon associated protein.	RNA polymerase II subunit E.	0.997
Cd3eap	Polr1c	ENSXCOP00000012867	ENSXCOP00000018849	CD3e molecule, epsilon associated protein.	RNA polymerase I and III subunit C.	0.999
Cd3eap	polr1b	ENSXCOP00000012867	ENSXCOP00000007920	CD3e molecule, epsilon associated protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
Cd3eap	polr2h	ENSXCOP00000012867	ENSXCOP00000004434	CD3e molecule, epsilon associated protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.980
Cd3eap	twistnb	ENSXCOP00000012867	ENSXCOP00000027044	CD3e molecule, epsilon associated protein.	TWIST neighbor.	0.999
Cd3eap	znrd1	ENSXCOP00000012867	ENSXCOP00000004366	CD3e molecule, epsilon associated protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
ENSXCOP00000009342	Cd3eap	ENSXCOP00000009342	ENSXCOP00000012867	Uncharacterized protein.	CD3e molecule, epsilon associated protein.	0.965
ENSXCOP00000009342	ENSXCOP00000015512	ENSXCOP00000009342	ENSXCOP00000015512	Uncharacterized protein.	RNA polymerase I and III subunit D.	0.976
ENSXCOP00000009342	ENSXCOP00000017763	ENSXCOP00000009342	ENSXCOP00000017763	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.935
ENSXCOP00000009342	ENSXCOP00000018198	ENSXCOP00000009342	ENSXCOP00000018198	Uncharacterized protein.	RNA polymerase I subunit E.	0.993
ENSXCOP00000009342	ENSXCOP00000026847	ENSXCOP00000009342	ENSXCOP00000026847	Uncharacterized protein.	Uncharacterized protein.	0.966
ENSXCOP00000009342	POLR2E	ENSXCOP00000009342	ENSXCOP00000012157	Uncharacterized protein.	RNA polymerase II subunit E.	0.977
ENSXCOP00000009342	Polr1c	ENSXCOP00000009342	ENSXCOP00000018849	Uncharacterized protein.	RNA polymerase I and III subunit C.	0.991
ENSXCOP00000009342	polr1b	ENSXCOP00000009342	ENSXCOP00000007920	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.995
ENSXCOP00000009342	polr2h	ENSXCOP00000009342	ENSXCOP00000004434	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.965