STRINGSTRING
Gen1 Gen1 ENSXCOP00000022273 ENSXCOP00000022273 rfc2 rfc2 rmi2 rmi2 Rad51c Rad51c Helq Helq ENSXCOP00000021451 ENSXCOP00000021451 Pold2 Pold2 ENSXCOP00000020142 ENSXCOP00000020142 ube2v2 ube2v2 LOC114146450 LOC114146450 ccna2 ccna2 ENSXCOP00000019422 ENSXCOP00000019422 ENSXCOP00000019170 ENSXCOP00000019170 ENSXCOP00000019083 ENSXCOP00000019083 ENSXCOP00000018891 ENSXCOP00000018891 ENSXCOP00000018850 ENSXCOP00000018850 LOC114134311 LOC114134311 Exo1 Exo1 LOC114161189 LOC114161189 rhno1 rhno1 Rad51ap1 Rad51ap1 ENSXCOP00000018218 ENSXCOP00000018218 ENSXCOP00000018217 ENSXCOP00000018217 ENSXCOP00000017691 ENSXCOP00000017691 ENSXCOP00000017667 ENSXCOP00000017667 ENSXCOP00000017612 ENSXCOP00000017612 LOC114145030 LOC114145030 ENSXCOP00000017338 ENSXCOP00000017338 ENSXCOP00000017337 ENSXCOP00000017337 Mre11 Mre11 ENSXCOP00000016765 ENSXCOP00000016765 Topbp1 Topbp1 Dna2 Dna2 ENSXCOP00000015627 ENSXCOP00000015627 HIST1H4J HIST1H4J ENSXCOP00000015465 ENSXCOP00000015465 Pold4 Pold4 ENSXCOP00000014852 ENSXCOP00000014852 Pole4 Pole4 ppp4c ppp4c ENSXCOP00000013329 ENSXCOP00000013329 Ccna1 Ccna1 ENSXCOP00000013308 ENSXCOP00000013308 Rfc3 Rfc3 ENSXCOP00000013093 ENSXCOP00000013093 Ppp4r2 Ppp4r2 ENSXCOP00000011797 ENSXCOP00000011797 ENSXCOP00000011653 ENSXCOP00000011653 sirt6 sirt6 rad51 rad51 ENSXCOP00000009556 ENSXCOP00000009556 ENSXCOP00000008860 ENSXCOP00000008860 ENSXCOP00000008859 ENSXCOP00000008859 Mus81 Mus81 ENSXCOP00000008228 ENSXCOP00000008228 LOC114133261 LOC114133261 Rfc4 Rfc4 ENSXCOP00000007607 ENSXCOP00000007607 uba52 uba52 ENSXCOP00000007270 ENSXCOP00000007270 ENSXCOP00000007078 ENSXCOP00000007078 ENSXCOP00000006663 ENSXCOP00000006663 HIST1H2BA HIST1H2BA ENSXCOP00000022277 ENSXCOP00000022277 Polk Polk Pole Pole LOC114149001 LOC114149001 ENSXCOP00000023176 ENSXCOP00000023176 LOC114159801 LOC114159801 Pold1 Pold1 CDK2 CDK2 Rad51d Rad51d RCBTB1 RCBTB1 ENSXCOP00000026229 ENSXCOP00000026229 ENSXCOP00000026234 ENSXCOP00000026234 ENSXCOP00000026597 ENSXCOP00000026597 ENSXCOP00000026621 ENSXCOP00000026621 Blm Blm Rad52 Rad52 ENSXCOP00000027383 ENSXCOP00000027383 Ube2n Ube2n LOC114138068 LOC114138068 SLX1 SLX1 ankrd11 ankrd11 ENSXCOP00000004072 ENSXCOP00000004072 Rpa3 Rpa3 ENSXCOP00000003814 ENSXCOP00000003814 Abl1 Abl1 Xrcc2 Xrcc2 ube2i ube2i HUS1 HUS1 Rad1 Rad1 ENSXCOP00000003115 ENSXCOP00000003115 RNF8 RNF8 Rad9a Rad9a Tipin Tipin Tdrd3 Tdrd3 LOC114138536 LOC114138536 Xrcc3 Xrcc3 rpa2 rpa2 ENSXCOP00000000492 ENSXCOP00000000492 Polh Polh ENSXCOP00000000335 ENSXCOP00000000335 sumo2 sumo2 ENSXCOP00000004968 ENSXCOP00000004968 ENSXCOP00000005616 ENSXCOP00000005616 ENSXCOP00000005688 ENSXCOP00000005688 Nsd2 Nsd2 Rbbp8 Rbbp8 pcna pcna ENSXCOP00000006635 ENSXCOP00000006635
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Gen1Chromo_2 domain-containing protein. (637 aa)
ENSXCOP00000022273ANK_REP_REGION domain-containing protein. (400 aa)
rfc2Replication factor C (activator 1) 2. (357 aa)
rmi2RecQ mediated genome instability 2. (146 aa)
Rad51cRAD51 paralog C. (361 aa)
HelqAbraxas 1, BRCA1 A complex subunit. (377 aa)
ENSXCOP00000021451DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (675 aa)
Pold2Polymerase (DNA directed), delta 2, regulatory subunit. (471 aa)
ENSXCOP00000020142Uncharacterized protein. (588 aa)
ube2v2Ubiquitin-conjugating enzyme E2 variant 2. (180 aa)
LOC114146450Histone H2B; Belongs to the histone H2B family. (116 aa)
ccna2Cyclin A2; Belongs to the cyclin family. (432 aa)
ENSXCOP00000019422EF-hand domain-containing protein. (1130 aa)
ENSXCOP00000019170Sirtuin 7. (421 aa)
ENSXCOP00000019083Exonuclease 3'-5' domain containing 2. (583 aa)
ENSXCOP00000018891ATR serine/threonine kinase; Belongs to the PI3/PI4-kinase family. (2484 aa)
ENSXCOP00000018850Uncharacterized protein. (106 aa)
LOC114134311Small ubiquitin-related modifier. (94 aa)
Exo1Exonuclease 1. (692 aa)
LOC114161189UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (155 aa)
rhno1Si:ch73-352p4.5. (297 aa)
Rad51ap1RAD51 associated protein 1. (293 aa)
ENSXCOP00000018218BRCT domain-containing protein. (450 aa)
ENSXCOP00000018217RFC1 domain-containing protein. (149 aa)
ENSXCOP00000017691Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (101 aa)
ENSXCOP00000017667annotation not available (93 aa)
ENSXCOP00000017612Histone H2B; Belongs to the histone H2B family. (111 aa)
LOC114145030Small ubiquitin-related modifier. (96 aa)
ENSXCOP00000017338Histone H2B; Belongs to the histone H2B family. (134 aa)
ENSXCOP00000017337Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (93 aa)
Mre11Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (664 aa)
ENSXCOP00000016765Ring finger protein 168. (353 aa)
Topbp1DNA topoisomerase II binding protein 1. (1484 aa)
Dna2Uncharacterized protein. (1054 aa)
ENSXCOP00000015627Histone H2B; Belongs to the histone H2B family. (151 aa)
HIST1H4JHistone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (96 aa)
ENSXCOP00000015465Histone H2B; Belongs to the histone H2B family. (124 aa)
Pold4Uncharacterized protein. (72 aa)
ENSXCOP00000014852BRISC and BRCA1 A complex member 2. (358 aa)
Pole4Polymerase (DNA-directed), epsilon 4, accessory subunit. (145 aa)
ppp4cSerine/threonine-protein phosphatase. (311 aa)
ENSXCOP00000013329MUS81 structure-specific endonuclease subunit. (538 aa)
Ccna1Cyclin A1; Belongs to the cyclin family. (397 aa)
ENSXCOP00000013308Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (589 aa)
Rfc3Replication factor C (activator 1) 3. (333 aa)
ENSXCOP00000013093Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (554 aa)
Ppp4r2Protein phosphatase 4, regulatory subunit 2b. (406 aa)
ENSXCOP00000011797BRISC and BRCA1 A complex member 1. (313 aa)
ENSXCOP00000011653Uncharacterized protein. (168 aa)
sirt6Sirtuin 6. (351 aa)
rad51DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (338 aa)
ENSXCOP00000009556Histone H2B; Belongs to the histone H2B family. (112 aa)
ENSXCOP00000008860BRCA1/BRCA2-containing complex, subunit 3. (258 aa)
ENSXCOP00000008859Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (101 aa)
Mus81Uncharacterized protein. (66 aa)
ENSXCOP00000008228Uncharacterized protein. (1176 aa)
LOC114133261Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2. (527 aa)
Rfc4Replication factor C (activator 1) 4. (325 aa)
ENSXCOP00000007607RAD50 homolog, double strand break repair protein. (1233 aa)
uba52Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
ENSXCOP00000007270Reverse transcriptase domain-containing protein. (269 aa)
ENSXCOP00000007078Uncharacterized protein. (1182 aa)
ENSXCOP00000006663Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (94 aa)
HIST1H2BAHistone H2B; Belongs to the histone H2B family. (115 aa)
ENSXCOP00000022277BRCT domain-containing protein. (149 aa)
PolkPolymerase (DNA directed) kappa. (366 aa)
PoleDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2225 aa)
LOC114149001Ubiquitin-like domain-containing protein. (77 aa)
ENSXCOP00000023176Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (411 aa)
LOC114159801UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
Pold1DNA polymerase. (1089 aa)
CDK2Cyclin dependent kinase 2; Belongs to the protein kinase superfamily. (264 aa)
Rad51dRAD51 paralog D. (337 aa)
RCBTB1Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (531 aa)
ENSXCOP00000026229Uncharacterized protein. (236 aa)
ENSXCOP00000026234FHA domain-containing protein. (99 aa)
ENSXCOP00000026597RecQ helicase-like 4. (795 aa)
ENSXCOP00000026621Polymerase (DNA-directed), delta 3, accessory subunit. (412 aa)
BlmBLM RecQ like helicase. (1379 aa)
Rad52Uncharacterized protein. (163 aa)
ENSXCOP00000027383KxDL motif containing 1. (193 aa)
Ube2nUbiquitin-conjugating enzyme E2Na; Belongs to the ubiquitin-conjugating enzyme family. (173 aa)
LOC114138068Ribosomal protein S27a. (156 aa)
SLX1Structure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA. (266 aa)
ankrd11Ankyrin repeat domain 11. (2824 aa)
ENSXCOP00000004072Essential meiotic structure-specific endonuclease 1. (362 aa)
Rpa3Replication protein A3. (120 aa)
ENSXCOP00000003814Methionine sulfoxide reductase B1b. (403 aa)
Abl1Protein kinase domain-containing protein. (223 aa)
Xrcc2RECA_2 domain-containing protein. (304 aa)
ube2iUbiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
HUS1Checkpoint protein; Belongs to the HUS1 family. (277 aa)
Rad1RAD1 homolog (S. pombe). (202 aa)
ENSXCOP00000003115Uncharacterized protein. (90 aa)
RNF8E3 ubiquitin-protein ligase RNF8; E3 ubiquitin-protein ligase that plays a key role in DNA damage signaling via 2 distinct roles: by mediating the 'Lys-63'-linked ubiquitination of histones H2A and H2AX and promoting the recruitment of DNA repair proteins at double-strand breaks (DSBs) sites, and by catalyzing 'Lys-48'-linked ubiquitination to remove target proteins from DNA damage sites. Following DNA DSBs, it is recruited to the sites of damage by ATM-phosphorylated MDC1 and catalyzes the 'Lys-63'-linked ubiquitination of histones H2A and H2AX, thereby promoting the formation of TP53 [...] (467 aa)
Rad9aCell cycle checkpoint control protein; Belongs to the rad9 family. (396 aa)
TipinTIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family. (319 aa)
Tdrd3Tudor domain containing 3. (798 aa)
LOC114138536BTB domain-containing protein. (531 aa)
Xrcc3DNA repair protein; Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA, thought to repair chromosomal fragmentation, translocations and deletions; Belongs to the RecA family. RAD51 subfamily. (362 aa)
rpa2Replication protein A2. (278 aa)
ENSXCOP00000000492Histone H2B; Belongs to the histone H2B family. (147 aa)
PolhPolymerase (DNA directed), eta. (696 aa)
ENSXCOP00000000335ATM serine/threonine kinase; Belongs to the PI3/PI4-kinase family. (2879 aa)
sumo2Small ubiquitin-related modifier. (95 aa)
ENSXCOP00000004968DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (523 aa)
ENSXCOP00000005616Uncharacterized protein. (217 aa)
ENSXCOP00000005688PWWP domain-containing protein. (226 aa)
Nsd2Nuclear receptor binding SET domain protein 2. (522 aa)
Rbbp8SAE2 domain-containing protein. (75 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
ENSXCOP00000006635RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae). (627 aa)
Your Current Organism:
Xiphophorus couchianus
NCBI taxonomy Id: 32473
Other names: Limia couchiana, Monterrey platyfish, X. couchianus
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